Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq341 141 9e-29 seq3095 118 1e-21 seq58707 107 2e-18 seq5942 96.9 4e-15 seq6036 82.4 8e-11 >seq341 Length=228855 Score = 141 bits (156), Expect = 9e-29 Identities = 373/558 (67%), Gaps = 11/558 (2%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 ||||| || || || |||| || || |||| ||| | ||||| || |||||||| Sbjct 2772 CACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTTAAT 2831 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGAC-CCCGAAAAGAA 16320 || |||||| |||||| ||||||| ||| ||||| || ||| | | ||||| ||||| Sbjct 2832 CCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCCGAGAAGAA 2890 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 || || ||||| | || || |||| || || || || | | | || || Sbjct 2891 AATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGGACTCTGAGCCAT--CG 2948 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440 | |||| | |||| | ||| || | | | |||| | || || || || | Sbjct 2949 A-TCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGCGTG 3007 Query 16441 AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 || | | | || |||| ||| | ||||| | |||| || | ||||||||| Sbjct 3008 GAAAAGCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGTACAT 3067 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCTCCGCTA 16559 || || || || ||||| || || || || || ||||| || ||| |||||||||| | Sbjct 3068 CTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCA-CGAGCCTCCGAGA 3126 Query 16560 TTTGTACTTCCA-CGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 |||| || ||| | | || | |||| || |||||||| ||||| ||||| || Sbjct 3127 TTTGAACCTCCTTCATGAA--CCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGGC 3184 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677 || ||||| || | |||||||||||||||| || ||||| || || | | ||| Sbjct 3185 GGCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCA 3244 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 | | || ||| | ||| | ||| || ||||| | ||||||||| ||| |||| || Sbjct 3245 GTGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTT 3304 Query 16738 TTTATACATTTTCCAAAT 16755 || ||||||| |||||| Sbjct 3305 CTTGTACATTTCCCAAAT 3322 >seq3095 Length=123113 Score = 118 bits (130), Expect = 1e-21 Identities = 371/563 (66%), Gaps = 15/563 (3%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || || || || |||| || || |||| ||| | ||||| ||||||||| Sbjct 111588 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTT 111529 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGAC-CCCGAAAA 16317 || || |||||| ||| || || |||| ||| |||||||| ||| | | ||||| || Sbjct 111528 AATCCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCCGAGAA 111470 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||| || || || || | ||||| |||| || || || ||| | | || | | Sbjct 111469 GAAAATCCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGG----ATTCTGAGC 111414 Query 16378 ACG--AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 || |||||| | |||| | ||| || | | |||| | || || || Sbjct 111413 -CGTCAATCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATT 111355 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | || | | || |||| ||| ||||||| | |||| || | |||| Sbjct 111354 GCGTGGAAAAGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTG 111295 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCTC 16554 ||||| || || || || ||||| || || ||||| || ||||| || ||| || ||||| Sbjct 111294 TACATCTCGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCA-CGCGCCTC 111236 Query 16555 CGCTATTTGTACTTCCA-CGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCA 16612 || ||||| || || | | || | | || || || ||||| || || ||||| Sbjct 111235 CGAGATTTGAACCTCTTTCATGAA--CCTCCCAGCTAGATTCTCCAAAACAATGCCGTCG 111178 Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATA 16672 || |||||||| || | | ||||||||||||| || || || || | || Sbjct 111177 GAGGCGGCAAAAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTA 111118 Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732 | ||| | | || ||| | ||| | ||| || ||||| | ||||||||| ||| || Sbjct 111117 TCCCAGTGCTGTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCT 111058 Query 16733 GCCTTTTTATACATTTTCCAAAT 16755 ||||| || ||||||| |||||| Sbjct 111057 GCCTTCTTGTACATTTCCCAAAT 111035 >seq58707 Length=1165 Score = 107 bits (118), Expect = 2e-18 Identities = 199/287 (69%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| | |||| ||| | |||| |||| || || || || ||||| || || || || Sbjct 657 ATATAAGATTCAAGCAGAAGACTGAACATCTCGGAATGGATATTCTCAATCGCGATTTGG 716 Query 16532 AATCCATAGAA-GCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAG 16590 || ||||| || ||| |||||||||| ||||| || ||| ||||| | || || Sbjct 717 AACCCATAAAACGCA-CGAGCCTCCGAGATTTGAACCTCCTTCATAAATCTTCTGGCGAG 775 Query 16591 GTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATAT-GTGCTTAATGAAAT 16649 |||||| |||||| |||| || || ||||| | ||| | |||||||||||||| Sbjct 776 GTTCTCCAAAACGATATCGTCTGAGGCGGCGAAAAAGGACAAGAACGTGCTTAATGAAAT 835 Query 16650 ATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTT 16709 || ||||| | | | | | ||| | | || ||| | ||| | ||| || |||| Sbjct 836 GCTTCTCGTCCTCGATCAAATTTTCCCAGTGCTATATATCCTGGGACAAATCGACCTCTT 895 Query 16710 CTGGCGTCCAAAAGCTAGC-CACTGCCTTTTTATACATTTTCCAAAT 16755 | | ||||||| || | |||| || || |||||||||||||| Sbjct 896 CCGCTCTCCAAAACTGAGGTCTCTGCTTTCTTGTACATTTTCCAAAT 942 >seq5942 Length=60911 Score = 96.9 bits (106), Expect = 4e-15 Identities = 198/287 (69%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 16471 TATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTG 16530 |||||| | |||| || | ||||||||| || || || || ||||| || || || || Sbjct 58517 TATATAAGATTCAAGCAAAAGACTGTACATCTCGGAATGGATATTCTCAATTGCGATTTG 58458 Query 16531 AAATCCATAGAA-GCATCGAGCCTCCGCTATTTGTA-CTTCCACGTAAAATCGTTCCGCC 16588 || | ||| || ||| |||||||||| ||||| | |||| | |||| || || | Sbjct 58457 GAACCTATAAAATGCA-CGAGCCTCCGAGATTTGAAACTTCTTCATAAA-TCTTTTGGGG 58400 Query 16589 AGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAA 16648 |||||||| |||||| | || || ||||||| | | | ||||||||||||| Sbjct 58399 AGGTTCTCCAAAACGATATCATCTGAGGCGACAAAAAAGACAAGAACGTGCTTAATGAAA 58340 Query 16649 TATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCT 16708 | || ||||| || | | | | ||||| | || ||| | ||| | ||| || ||| Sbjct 58339 TGCTTCTCGTC-GA--TCAACTTTTCCCAATGCTATATATCCTGGGACAAATCGACCTCT 58283 Query 16709 TCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 || | ||||||| | | |||| || || ||||||| |||||| Sbjct 58282 TCCGCTCTCCAAAACGAGGTCTCTGCTTTCTTGTACATTTCCCAAAT 58236 >seq6036 Length=74774 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || ||||| ||||| ||||| || ||||| ||||||||||| || || || Sbjct 63484 AGGCAAGCAAAGTCACAATGAAGTCCCTCATCTCTCGAAATAAGTTCGTTTGAGAATGTC 63543 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA 16305 || |||||||| |||| || ||||||| ||| ||||| ||| |||| Sbjct 63544 AAGCCTGGCATCATTCCCCGCTTCTTTAGCCAAAATATTGCA-CAAA 63589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510842159249800