Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20]
89,515 sequences; 867,455,155 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq3095 199 5e-46
seq341 163 3e-35
seq58707 127 2e-24
seq6003 111 2e-19
seq1847 111 2e-19
seq1602 93.3 5e-14
>seq3095
Length=123113
Score = 199 bits (220), Expect = 5e-46
Identities = 595/910 (65%), Gaps = 16/910 (2%)
Strand=Plus/Minus
Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAA--TGATATAT 23901
|| ||||||||||| || | || || || ||||| ||||| || | ||| |||| ||
Sbjct 111876 TTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCCCCTGTAAACTGATCAAT 111817
Query 23902 TTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAA 23961
| |||| |||| |||| || |||||| || | | | | |||| | | || |
Sbjct 111816 T--CCATCCAATCAAATGGGTTTTGAACATTGTATAATTTGCTGTATCCAAGTGCATTCA 111759
Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021
|| |||||| || ||||| || || ||| |||||| |||| ||||||||| | |
Sbjct 111758 GCAGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATCACCATTCATTCCGACCA 111699
Query 24022 GTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 24079
| | |||||||| | ||| | |||||| || ||| |||||||| | |
Sbjct 111698 GGGCACAAGGAAGAGCATCGCAG--ACAAATTCCCTCTCGATATCCACCGCGTCAGCAAC 111641
Query 24080 AATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139
|| | ||| || || || || | | | | | | | || || ||
Sbjct 111640 AAGTCCCTTGACTCGATCCTCGCTGAGTTTCATCCTCAGAAGGCTGTAGAGCAGGCAAGC 111581
Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199
||||| ||||||| |||||| |||| ||||| ||||| ||||| || | ||| ||
Sbjct 111580 AAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAATCCAGG 111521
Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTC 24258
||||| ||||||||||| ||||||||||| | |||| | | | || || |||||||| |
Sbjct 111520 CATTAATCCACGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAAAATCC 111462
Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTCATGTATCC 24315
|||| || |||||||| | | | || | | | | || |||| ||||
Sbjct 111461 CTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGATTCTGAGCCGTCA---ATCC 111405
Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375
| | ||||| | ||||||||| |||||||| | ||||| || || | || |
Sbjct 111404 AGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGAAAA 111345
Query 24376 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435
| || || || | ||| || | ||| | |||| | |||||| ||||| || |
Sbjct 111344 GCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACATCTCGG 111285
Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495
|||| || || ||||| || || || || || || ||| | ||||| | || || |
Sbjct 111284 AATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGATTTGAA 111225
Query 24496 CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555
| ||| | || | | |||| ||| || || || ||||| ||| |||||||
Sbjct 111224 CCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGGCAAAAA 111165
Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 24615
| || | ||||| || || |||| || || || || | ||||| ||| | | |
Sbjct 111164 AGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTGCTGTA 111105
Query 24616 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 24675
||| | || | ||| || |||||| | |||||||| || ||||||||||| || ||||
Sbjct 111104 CATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTTGTACA 111045
Query 24676 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAA 24735
| | ||| || | ||||||||||||| || || || | || || |||| | |
Sbjct 111044 TTTCCCAAATTTGGGGATATTGAATTGGGAACATGCAGAACCGATCTGTATTTGGGGTGA 110985
Query 24736 GGATTGGTTC 24745
|||| |||||
Sbjct 110984 GGATGGGTTC 110975
>seq341
Length=228855
Score = 163 bits (180), Expect = 3e-35
Identities = 388/582 (67%), Gaps = 6/582 (1%)
Strand=Plus/Plus
Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190
||| || || ||||| ||||||| ||||| |||| | || || ||||| || || ||
Sbjct 2768 CAAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGT 2827
Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249
| ||| ||||||| || ||||| || ||||||||||| | |||| | | | || || |
Sbjct 2828 TAATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCCCGAGA 2886
Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGT--C 24307
||||||| ||||| || || ||||| | | | || || | | | ||| |
Sbjct 2887 AGAAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAG--GACTCTGAGCC 2944
Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367
|| ||||| | ||||| | ||||||||| | |||||||| | ||||| || ||
Sbjct 2945 ATCGATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGC 3004
Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427
| || || || || || | ||| || | ||| | |||| | |||||| ||
Sbjct 3005 GTGGAAAAGCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGTA 3064
Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487
||| || ||||| || || ||||| || ||||| || || || || | |||||| |
Sbjct 3065 CATCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCGA 3124
Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547
|| || || || | || | | | || | || || || || ||||| |||
Sbjct 3125 GATTTGAACCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGGC 3184
Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607
|| ||||| || | | || || || |||| || ||||| || ||||| | |||
Sbjct 3185 GGCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCA 3244
Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667
| | ||||| | || | ||| || |||||| | |||||||| || |||||||| ||
Sbjct 3245 GTGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTT 3304
Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709
|| ||||| | ||| || | |||| ||||||||||| ||
Sbjct 3305 CTTGTACATTTCCCAAATTTTGGGATACTGAATTGGAAACAT 3346
>seq58707
Length=1165
Score = 127 bits (140), Expect = 2e-24
Identities = 362/546 (66%), Gaps = 13/546 (2%)
Strand=Plus/Plus
Query 24171 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 24230
||||| ||||| || || || | ||| ||||| || |||||||| |||||||||||
Sbjct 427 ATTAACTCGTTCGAGAAAGTTAATCCATACATTAATCCTCGCTTTTTTAGCCAAAATATT 486
Query 24231 GACGCAAATGATCCA-GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA---TAAGTCT 24286
| ||| | | | | || |||||||| ||||| || || ||||||| || | |
Sbjct 487 GT-GCAGAAGCTTCTTGAGAAGAAAATCCCTTCAACGCAAGCGAAGGCAAGTATACGCTT 545
Query 24287 TTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 24346
|| | | | || ||| ||||| | ||||| | ||||||||||| ||
Sbjct 546 AGCTAAGGATTCTGAGCCGTCG---ATCCAGCGAGG-GCCCACTTGGCCTTCTTTTCCAC 601
Query 24347 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 24406
|||||| | ||||| || | | || || ||||| || || ||| || | |||
Sbjct 602 ACAAGGAACGGTCTCGATTGTGTGGAAAAGCCTATTTTTCTCCTTCGAATCCTTGATATA 661
Query 24407 TGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCC 24466
| |||| || |||||| |||| || ||||| || || ||||| || ||||| || ||
Sbjct 662 AGATTCAAGCAGAAGACTGAACATCTCGGAATGGATATTCTCAATCGCGATTTGGAACCC 721
Query 24467 GTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT-GCTAAATTTT 24525
|| || | |||||| | || || || || | ||||| |||| || | || |
Sbjct 722 ATAAAACGCACGAGCCTCCGAGATTTGAACCTCCTTCATAAATC-TTCTGGCGAGGTTCT 780
Query 24526 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA-TACATGTTTTATAAAATATTTT 24584
| || || |||| ||| || ||||| | ||| || || || || |||| ||
Sbjct 781 CCAAAACGATATCGTCTGAGGCGGCGAAAAAGGACAAGAACGTGCTTAATGAAATGCTTC 840
Query 24585 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 24644
||||| | | || | ||| | | ||||| | || | ||| || |||||| ||
Sbjct 841 TCGTCCTCGATCAAATTTTCCCAGTGCTATATATCCTGGGACAAATCGACCTCTTCCGCT 900
Query 24645 GTCCAAAA-TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 24703
||||||| ||| | |||||| || || ||||| ||||| || | |||| ||||||||
Sbjct 901 CTCCAAAACTGAGGTCTCTGCTTTCTTGTACATTTTCCAAATTTTGGGATACTGAATTGG 960
Query 24704 AAAAAT 24709
||| ||
Sbjct 961 AAACAT 966
>seq6003
Length=93342
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244
||||||||||| | |||| ||| |||| ||| | |||| || |||||||| ||| |||
Sbjct 80735 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 80794
Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304
|||||||| ||||| || || || || |||||| | ||||| || ||| || ||
Sbjct 80795 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 80854
Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364
| ||| || ||||| || ||| ||| | || || ||| | |||||||| |||
Sbjct 80855 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 80914
Query 54365 CCCTCTATACTATCATCCATCATG 54388
||||| || ||||| || |||||
Sbjct 80915 CCCTCAATGCTATCTTCTTTCATG 80938
Score = 102 bits (112), Expect = 1e-16
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484
||||| |||||||| | |||||||| || || ||||||||| | ||| | |||||
Sbjct 81095 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGTGTAAACCATCGCTGAGACAATAGATGA 81154
Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543
|| || | |||||||| |||||||| | ||| || || || || | || | ||| ||
Sbjct 81155 TATGTTTTGATAGCTGCATCTATATCATCCTTG-TGGATCCCAACAGAAACCCTCATCAA 81213
Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603
|||||| ||||| |||||||| | ||| | || || | | || ||| | || |
Sbjct 81214 CATGTGTTGAGGCCTTTCAACAACCTTCCCTCTGATCTTTAAGAGATACGATCTCTCAAG 81273
Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
||||||||||||||| | | || |||||||| || || || ||
Sbjct 81274 AGTTTTAAAACCAAAGAAATCATAATCAAAGTCTCTGTCATATATGAT 81321
>seq1847
Length=115635
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244
||||||||||| | |||| ||| |||| ||| | |||| || |||||||| ||| |||
Sbjct 24547 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 24606
Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304
|||||||| ||||| || || || || |||||| | ||||| || ||| || ||
Sbjct 24607 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 24666
Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364
| ||| || ||||| || ||| ||| | || || ||| | |||||||| |||
Sbjct 24667 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 24726
Query 54365 CCCTCTATACTATCATCCATCATG 54388
||||| || ||||| || |||||
Sbjct 24727 CCCTCGATGCTATCTTCTTTCATG 24750
Score = 84.2 bits (92), Expect = 3e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 53930 TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACAT 53989
|| ||| |||| ||||| |||||||| || |||||| || |||||||||||
Sbjct 24081 TCATATTGTGTGTACAAAGTCTCAAACTCTTCACCCCAACAATCAGCCAATCCAGGAGCC 24140
Query 53990 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 54049
|||| ||||| | ||| ||||| | || | | | |||| | |||||| | ||||
Sbjct 24141 TCATTTGGACAAAACAATGACCATTGCCCATTAGATTGGACTCTCTGCATAAATAAATCA 24200
Query 54050 GGAATCCAAAGAGCTATAAATAGATCTCTGG 54080
|| | ||||||||| ||||||||||||||
Sbjct 24201 GGCACCCAAAGAGCATAAAATAGATCTCTGG 24231
>seq1602
Length=196056
Score = 93.3 bits (102), Expect = 5e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244
|| |||||||| | |||| ||| || | ||| | ||||||| |||||||| |||||||
Sbjct 115645 CCCCCCTGATCCACATATCGAGCTGTATCATTGAACACTCTCAGCATTGGAACAATACCA 115704
Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304
||||| | ||||| || || ||||| |||||| | ||||| || ||| | ||
Sbjct 115705 TTGGAGGTCCCATTTGTTCCACGAATATAACTTCCAGTTGCACGGATGTTATGCACAGAG 115764
Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364
| ||| || || || || ||| ||| | || || || | |||||||| |||
Sbjct 115765 ACACCAATTCCTCCGGCTGATTTGCTGATGACAGCACACTCCTTCAGTGTATCATATATG 115824
Query 54365 CCCTCTATACTATCATCCATCATG 54388
||||| || ||||| || |||||
Sbjct 115825 CCCTCAATGCTATCCTCTTTCATG 115848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593057262637200
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