Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3095 199 5e-46 seq341 163 3e-35 seq58707 127 2e-24 seq6003 111 2e-19 seq1847 111 2e-19 seq1602 93.3 5e-14 >seq3095 Length=123113 Score = 199 bits (220), Expect = 5e-46 Identities = 595/910 (65%), Gaps = 16/910 (2%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAA--TGATATAT 23901 || ||||||||||| || | || || || ||||| ||||| || | ||| |||| || Sbjct 111876 TTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCCCCTGTAAACTGATCAAT 111817 Query 23902 TTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAA 23961 | |||| |||| |||| || |||||| || | | | | |||| | | || | Sbjct 111816 T--CCATCCAATCAAATGGGTTTTGAACATTGTATAATTTGCTGTATCCAAGTGCATTCA 111759 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 || |||||| || ||||| || || ||| |||||| |||| ||||||||| | | Sbjct 111758 GCAGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATCACCATTCATTCCGACCA 111699 Query 24022 GTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 24079 | | |||||||| | ||| | |||||| || ||| |||||||| | | Sbjct 111698 GGGCACAAGGAAGAGCATCGCAG--ACAAATTCCCTCTCGATATCCACCGCGTCAGCAAC 111641 Query 24080 AATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139 || | ||| || || || || | | | | | | | || || || Sbjct 111640 AAGTCCCTTGACTCGATCCTCGCTGAGTTTCATCCTCAGAAGGCTGTAGAGCAGGCAAGC 111581 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 ||||| ||||||| |||||| |||| ||||| ||||| ||||| || | ||| || Sbjct 111580 AAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAATCCAGG 111521 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTC 24258 ||||| ||||||||||| ||||||||||| | |||| | | | || || |||||||| | Sbjct 111520 CATTAATCCACGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAAAATCC 111462 Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTCATGTATCC 24315 |||| || |||||||| | | | || | | | | || |||| |||| Sbjct 111461 CTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGATTCTGAGCCGTCA---ATCC 111405 Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375 | | ||||| | ||||||||| |||||||| | ||||| || || | || | Sbjct 111404 AGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGAAAA 111345 Query 24376 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435 | || || || | ||| || | ||| | |||| | |||||| ||||| || | Sbjct 111344 GCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACATCTCGG 111285 Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495 |||| || || ||||| || || || || || || ||| | ||||| | || || | Sbjct 111284 AATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGATTTGAA 111225 Query 24496 CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555 | ||| | || | | |||| ||| || || || ||||| ||| ||||||| Sbjct 111224 CCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGGCAAAAA 111165 Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 24615 | || | ||||| || || |||| || || || || | ||||| ||| | | | Sbjct 111164 AGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTGCTGTA 111105 Query 24616 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 24675 ||| | || | ||| || |||||| | |||||||| || ||||||||||| || |||| Sbjct 111104 CATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTTGTACA 111045 Query 24676 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAA 24735 | | ||| || | ||||||||||||| || || || | || || |||| | | Sbjct 111044 TTTCCCAAATTTGGGGATATTGAATTGGGAACATGCAGAACCGATCTGTATTTGGGGTGA 110985 Query 24736 GGATTGGTTC 24745 |||| ||||| Sbjct 110984 GGATGGGTTC 110975 >seq341 Length=228855 Score = 163 bits (180), Expect = 3e-35 Identities = 388/582 (67%), Gaps = 6/582 (1%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || || ||||| ||||||| ||||| |||| | || || ||||| || || || Sbjct 2768 CAAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGT 2827 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249 | ||| ||||||| || ||||| || ||||||||||| | |||| | | | || || | Sbjct 2828 TAATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCCCGAGA 2886 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGT--C 24307 ||||||| ||||| || || ||||| | | | || || | | | ||| | Sbjct 2887 AGAAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAG--GACTCTGAGCC 2944 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 || ||||| | ||||| | ||||||||| | |||||||| | ||||| || || Sbjct 2945 ATCGATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGC 3004 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 | || || || || || | ||| || | ||| | |||| | |||||| || Sbjct 3005 GTGGAAAAGCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGTA 3064 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||| || ||||| || || ||||| || ||||| || || || || | |||||| | Sbjct 3065 CATCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCGA 3124 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 || || || || | || | | | || | || || || || ||||| ||| Sbjct 3125 GATTTGAACCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGGC 3184 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 || ||||| || | | || || || |||| || ||||| || ||||| | ||| Sbjct 3185 GGCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCA 3244 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 | | ||||| | || | ||| || |||||| | |||||||| || |||||||| || Sbjct 3245 GTGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTT 3304 Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || ||||| | ||| || | |||| ||||||||||| || Sbjct 3305 CTTGTACATTTCCCAAATTTTGGGATACTGAATTGGAAACAT 3346 >seq58707 Length=1165 Score = 127 bits (140), Expect = 2e-24 Identities = 362/546 (66%), Gaps = 13/546 (2%) Strand=Plus/Plus Query 24171 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 24230 ||||| ||||| || || || | ||| ||||| || |||||||| ||||||||||| Sbjct 427 ATTAACTCGTTCGAGAAAGTTAATCCATACATTAATCCTCGCTTTTTTAGCCAAAATATT 486 Query 24231 GACGCAAATGATCCA-GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA---TAAGTCT 24286 | ||| | | | | || |||||||| ||||| || || ||||||| || | | Sbjct 487 GT-GCAGAAGCTTCTTGAGAAGAAAATCCCTTCAACGCAAGCGAAGGCAAGTATACGCTT 545 Query 24287 TTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 24346 || | | | || ||| ||||| | ||||| | ||||||||||| || Sbjct 546 AGCTAAGGATTCTGAGCCGTCG---ATCCAGCGAGG-GCCCACTTGGCCTTCTTTTCCAC 601 Query 24347 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 24406 |||||| | ||||| || | | || || ||||| || || ||| || | ||| Sbjct 602 ACAAGGAACGGTCTCGATTGTGTGGAAAAGCCTATTTTTCTCCTTCGAATCCTTGATATA 661 Query 24407 TGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCC 24466 | |||| || |||||| |||| || ||||| || || ||||| || ||||| || || Sbjct 662 AGATTCAAGCAGAAGACTGAACATCTCGGAATGGATATTCTCAATCGCGATTTGGAACCC 721 Query 24467 GTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT-GCTAAATTTT 24525 || || | |||||| | || || || || | ||||| |||| || | || | Sbjct 722 ATAAAACGCACGAGCCTCCGAGATTTGAACCTCCTTCATAAATC-TTCTGGCGAGGTTCT 780 Query 24526 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA-TACATGTTTTATAAAATATTTT 24584 | || || |||| ||| || ||||| | ||| || || || || |||| || Sbjct 781 CCAAAACGATATCGTCTGAGGCGGCGAAAAAGGACAAGAACGTGCTTAATGAAATGCTTC 840 Query 24585 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 24644 ||||| | | || | ||| | | ||||| | || | ||| || |||||| || Sbjct 841 TCGTCCTCGATCAAATTTTCCCAGTGCTATATATCCTGGGACAAATCGACCTCTTCCGCT 900 Query 24645 GTCCAAAA-TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 24703 ||||||| ||| | |||||| || || ||||| ||||| || | |||| |||||||| Sbjct 901 CTCCAAAACTGAGGTCTCTGCTTTCTTGTACATTTTCCAAATTTTGGGATACTGAATTGG 960 Query 24704 AAAAAT 24709 ||| || Sbjct 961 AAACAT 966 >seq6003 Length=93342 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||||||||| | |||| ||| |||| ||| | |||| || |||||||| ||| ||| Sbjct 80735 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 80794 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 |||||||| ||||| || || || || |||||| | ||||| || ||| || || Sbjct 80795 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 80854 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || ||||| || ||| ||| | || || ||| | |||||||| ||| Sbjct 80855 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 80914 Query 54365 CCCTCTATACTATCATCCATCATG 54388 ||||| || ||||| || ||||| Sbjct 80915 CCCTCAATGCTATCTTCTTTCATG 80938 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| |||||||| | |||||||| || || ||||||||| | ||| | ||||| Sbjct 81095 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGTGTAAACCATCGCTGAGACAATAGATGA 81154 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | |||||||| |||||||| | ||| || || || || | || | ||| || Sbjct 81155 TATGTTTTGATAGCTGCATCTATATCATCCTTG-TGGATCCCAACAGAAACCCTCATCAA 81213 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||| ||||| |||||||| | ||| | || || | | || ||| | || | Sbjct 81214 CATGTGTTGAGGCCTTTCAACAACCTTCCCTCTGATCTTTAAGAGATACGATCTCTCAAG 81273 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||||||||||||| | | || |||||||| || || || || Sbjct 81274 AGTTTTAAAACCAAAGAAATCATAATCAAAGTCTCTGTCATATATGAT 81321 >seq1847 Length=115635 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||||||||| | |||| ||| |||| ||| | |||| || |||||||| ||| ||| Sbjct 24547 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 24606 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 |||||||| ||||| || || || || |||||| | ||||| || ||| || || Sbjct 24607 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 24666 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || ||||| || ||| ||| | || || ||| | |||||||| ||| Sbjct 24667 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 24726 Query 54365 CCCTCTATACTATCATCCATCATG 54388 ||||| || ||||| || ||||| Sbjct 24727 CCCTCGATGCTATCTTCTTTCATG 24750 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 53930 TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACAT 53989 || ||| |||| ||||| |||||||| || |||||| || ||||||||||| Sbjct 24081 TCATATTGTGTGTACAAAGTCTCAAACTCTTCACCCCAACAATCAGCCAATCCAGGAGCC 24140 Query 53990 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 54049 |||| ||||| | ||| ||||| | || | | | |||| | |||||| | |||| Sbjct 24141 TCATTTGGACAAAACAATGACCATTGCCCATTAGATTGGACTCTCTGCATAAATAAATCA 24200 Query 54050 GGAATCCAAAGAGCTATAAATAGATCTCTGG 54080 || | ||||||||| |||||||||||||| Sbjct 24201 GGCACCCAAAGAGCATAAAATAGATCTCTGG 24231 >seq1602 Length=196056 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || |||||||| | |||| ||| || | ||| | ||||||| |||||||| ||||||| Sbjct 115645 CCCCCCTGATCCACATATCGAGCTGTATCATTGAACACTCTCAGCATTGGAACAATACCA 115704 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||||| | ||||| || || ||||| |||||| | ||||| || ||| | || Sbjct 115705 TTGGAGGTCCCATTTGTTCCACGAATATAACTTCCAGTTGCACGGATGTTATGCACAGAG 115764 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || ||| ||| | || || || | |||||||| ||| Sbjct 115765 ACACCAATTCCTCCGGCTGATTTGCTGATGACAGCACACTCCTTCAGTGTATCATATATG 115824 Query 54365 CCCTCTATACTATCATCCATCATG 54388 ||||| || ||||| || ||||| Sbjct 115825 CCCTCAATGCTATCCTCTTTCATG 115848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593057262637200