Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq203 98.7 8e-16 seq10374 95.1 1e-14 seq1123 89.7 4e-13 seq979 89.7 4e-13 seq7954 82.4 7e-11 seq646 82.4 7e-11 >seq203 Length=254899 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| |||||||| || ||||| ||||| ||| ||| || Sbjct 79953 ATGCAAATTTTCGTCAAGACATTGACAGGGAAAACTATTACTTTGGAAGTTGAAAGTTCA 79894 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| |||||| ||||| ||||| | || ||| || Sbjct 79893 GACACAATCGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGACCAG 79834 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || ||||| || || || | ||| | || ||||||||| Sbjct 79833 CAGAGGTTGATCTTTGCCGGGAAACAGCTCGAGGACGGGAGGACTCTTGCTGATTACAAT 79774 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || || |||||||| ||||||||| | ||||| Sbjct 79773 ATCCAAAAGGAATCAACTCTTCACCTTGTGTT 79742 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || ||||| || ||| ||| || | Sbjct 80181 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAAACTATAACCTTGGAAGTTGAGAGTTCG 80122 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| |||||| ||||| ||||| | || || ||| Sbjct 80121 GACACAATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATCCCTCCGGACCAA 80062 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| ||||| ||||| ||||||||||| |||||| | || | || ||||| || Sbjct 80061 CAAAGGCTTATATTTGCAGGCAAACAACTTGAAGATGGAAGGACCCTTGCGGATTATAAC 80002 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || |||||||| || || |||||| | ||||| Sbjct 80001 ATCCAGAAGGAGTCGACCCTTCACCTTGTGTT 79970 >seq10374 Length=62593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| ||||| ||||| || || ||| |||| |||| | | Sbjct 57634 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACTATCACCCTCGAAGTGGAAAGCTCT 57693 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| || || || || ||||| | || ||| || Sbjct 57694 GATACCATTGACAACGTAAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAG 57753 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||||||||| ||||| || |||||||| || ||| | || |||| |||||||| Sbjct 57754 CAAAGACTTATTTTTGCTGGTAAACAACTTGAGGATGGCCGTACCCTGGCAGATTACAAC 57813 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| || |||||||| |||| | |||| | ||||| Sbjct 57814 ATCCAGAAGGAGTCCACTCTTCATTTGGTCCTCAGATTGAGGGGAGG 57860 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || || ||||| ||||| || || ||| || ||| | | Sbjct 58774 ATGCAAATTTTTGTGAAGACCTTGACCGGCAAGACGATCACCTTGGAGGTGGAGAGCTCG 58833 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| |||||| ||||| || ||| | || ||| ||| Sbjct 58834 GACACCATTGACAATGTCAAGGCAAAAATCCAGGATAAGGAGGGTATTCCACCAGACCAA 58893 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || || || || ||| | || |||| || ||||| Sbjct 58894 CAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACCTTGGCGGACTACAAC 58953 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || ||||| || |||||||| ||| ||||| | | || | |||||| Sbjct 58954 ATCCAGAAAGAGTCTACTCTGCACTTGGTGCTTAGGTTGAGGGGAGGG 59001 >seq1123 Length=183110 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| | || || |||||||||||| || || | | Sbjct 67657 ATGCAAATCTTTGTCAAAACTCTTACTGGGAAAACCATTACCCTTGAGGTTGAGAGCTCT 67716 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| || || ||||| || || | ||| |||||| Sbjct 67717 GACACGATTGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCGGATCAA 67776 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | || ||||| ||||| || || |||||| || ||| | || |||||||| Sbjct 67777 CAGAGATTGATTTTTGCTGGCAAGCAGCTTGAAGATGGCAGAACCCTTGCAGATTACAAC 67836 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| || ||||| ||||| || | |||| ||||| Sbjct 67837 ATTCAGAAGGAGAGCACCCTTCATTTGGTGCTAAGGCTACGCGGAGG 67883 >seq979 Length=283929 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | ||| ||| || |||||| | || ||||||||||| || ||||| Sbjct 158203 GACAAAGAAGGTATTCCCCCAGACCAGCAAAGATTGATTTTTGCGGGCAAGCAGCTGGAG 158262 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||| | ||| | || |||||||| ||||||||||| ||||||||| ||||| Sbjct 158263 GATGGCCGGACTCTAGCAGATTACAACATTCAGAAGGAGAGCACTCTTCACTTGGTG 158319 >seq7954 Length=38498 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || ||||||||||| || ||||| || |||||||| |||||| | || |||||||| Sbjct 10470 GACCAACAAAGACTCATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTGGCCGAT 10411 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||| || ||||| || || || ||| |||| Sbjct 10410 TACAATATCCAAAAGGAGTCCACCCTGCACTTGGT 10376 >seq646 Length=154290 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || ||||| || |||||||| || || ||||| || || ||| | ||| |||| ||| Sbjct 48919 GACCAACAGAGGCTTATCTTCGCTGGTAAACAGCTTGAGGATGGCCGTACTTTGGCTGAT 48860 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||| ||||||||||| || ||||| ||| ||||||| Sbjct 48859 TACAACATTCAGAAGGAGTCCACTCTCCACTTGGTGTT 48822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427868700817325