Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq203 95.1 1e-14 seq3534 87.8 1e-12 seq10374 86.0 5e-12 seq2537 86.0 5e-12 seq1123 86.0 5e-12 seq7954 82.4 6e-11 >seq203 Length=254899 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| |||||||| || ||||| ||||| ||| ||| || Sbjct 79953 ATGCAAATTTTCGTCAAGACATTGACAGGGAAAACTATTACTTTGGAAGTTGAAAGTTCA 79894 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| ||||| ||||| | || ||| || Sbjct 79893 GACACAATCGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGACCAG 79834 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || ||||| | || || | ||| | || ||||||||| Sbjct 79833 CAGAGGTTGATCTTTGCCGGGAAACAGCTCGAGGACGGGAGGACTCTTGCTGATTACAAT 79774 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| ||||||||| | ||||| Sbjct 79773 ATCCAAAAGGAATCAACTCTTCACCTTGTGTT 79742 >seq3534 Length=113076 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || || || || || ||||| ||||| || |||||||||||| Sbjct 92646 GACAAAGAAGGTATACCTCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAATTGGAA 92705 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT- 25246 ||| || |||| ||||||||||| ||||||||||| || |||||| | || || Sbjct 92706 GATGGACGGACCTTGGCAGATTACAATATCCAAAAGGAATCAACACTTCACCTCGTTTTG 92765 Query 25247 ACGATTACGAGGAGG 25261 | | ||| ||||||| Sbjct 92766 AGGCTTA-GAGGAGG 92779 >seq10374 Length=62593 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| ||||| ||||| || || ||| |||| |||| | | Sbjct 57634 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACTATCACCCTCGAAGTGGAAAGCTCT 57693 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | ||| || || || || ||||| | || ||| || Sbjct 57694 GATACCATTGACAACGTAAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAG 57753 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||||||||| ||||| || |||||| | || ||| | || |||| |||||||| Sbjct 57754 CAAAGACTTATTTTTGCTGGTAAACAACTTGAGGATGGCCGTACCCTGGCAGATTACAAC 57813 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||| || |||||||| |||| | |||| | ||||| Sbjct 57814 ATCCAGAAGGAGTCCACTCTTCATTTGGTCCTCAGATTGAGGGGAGG 57860 >seq2537 Length=190147 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || ||||| || || ||||| ||||| || |||||||||||| Sbjct 144241 GACAAAGAAGGTATACCTCCTGATCAGCAGAGGCTTATATTTGCTGGTAAACAATTGGAA 144300 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| | || | || ||||||||||| ||||||||||| || ||||| Sbjct 144301 GATGGCCGGACCTTAGCAGATTACAATATCCAAAAGGAATCAACACTTCA 144350 >seq1123 Length=183110 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || ||||||| | || || |||||||||||| || || | | Sbjct 67657 ATGCAAATCTTTGTCAAAACTCTTACTGGGAAAACCATTACCCTTGAGGTTGAGAGCTCT 67716 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || ||||| || || ||||| || || | ||| |||||| Sbjct 67717 GACACGATTGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCGGATCAA 67776 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | || ||||| ||||| || | |||||| || ||| | || |||||||| Sbjct 67777 CAGAGATTGATTTTTGCTGGCAAGCAGCTTGAAGATGGCAGAACCCTTGCAGATTACAAC 67836 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| || ||||| ||||| || | |||| ||||| Sbjct 67837 ATTCAGAAGGAGAGCACCCTTCATTTGGTGCTAAGGCTACGCGGAGG 67883 >seq7954 Length=38498 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || ||||||||||| || ||||| || |||||| | |||||| | || |||||||| Sbjct 10470 GACCAACAAAGACTCATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTGGCCGAT 10411 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||||| |||||||| || || || ||| |||| Sbjct 10410 TACAATATCCAAAAGGAGTCCACCCTGCACTTGGT 10376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410348635454210