Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1123 98.7 1e-15 seq203 98.7 1e-15 seq10374 93.3 6e-14 seq979 89.7 8e-13 >seq1123 Length=183110 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||| | ||| ||||||| ||| |||| ||||| ||||||||||||||||| Sbjct 68066 ATATTGTAATCCGCAAGTGTTCTGCCATCTTCTAGCTGTTTGCCAGCAAAAATCAATCTC 68007 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||||||||| || ||||| || || Sbjct 68006 TGCTGGTCCGGAGGAATGCCCTCTTTGTCCTG 67975 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/209 (68%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | || || || || ||| |||||||| | ||| |||| | ||| || Sbjct 67637 ACCAAGTGGAGGGTGGACTCCTTCTGTATGTTATAATCAGCAAGGGTTCGACCATCTTCG 67578 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | ||| ||||||||||| |||| ||||| || || || |||||||||||||| ||||| Sbjct 67577 AGTTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGG 67518 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||||| |||||||| || ||||| ||||| || || Sbjct 67517 ATCTTGGCTTTTACATTGTCAATGGTATCAGAACTTTCCACCTCTAGGGTGATGGTCTTT 67458 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || |||| ||||| | ||| |||||||| Sbjct 67457 CCAGTTAGGGTTTTGACGAAGATTTGCAT 67429 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || ||||||| ||| ||||||| ||| || | || || ||||||||||||||||| Sbjct 67838 ATGTTGTAATCTGCAAGGGTTCTGCCATCTTCAAGCTGCTTGCCAGCAAAAATCAATCTC 67779 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || |||||||| |||||||| || |||||||| Sbjct 67778 TGTTGATCCGGGGGAATTCCCTCCTTATCTTG 67747 >seq203 Length=254899 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || || || || || | || | ||| ||||| || ||||| ||||| | | Sbjct 79727 CCACCCCTGAGCCTCAACACAAGGTGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCA 79786 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | || || | ||||| || ||||| ||||| || ||||| || || ||| Sbjct 79787 AGAGTCCTCCCGTCCTCGAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 79846 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| |||||||| || ||||||||||| ||| Sbjct 79847 ATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTATCGATTGTGTCTGAACTTTCAACT 79906 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | || || ||||| ||||| ||||| || | ||| |||||||| Sbjct 79907 TCCAAAGTAATAGTTTTCCCTGTCAATGTCTTGACGAAAATTTGCAT 79953 >seq10374 Length=62593 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/229 (67%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || || | ||| | |||||||| | ||| || || || || || ||||||| Sbjct 57862 TTCCTCCCCTCAATCTGAGGACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAATCTG 57803 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 || || | || ||| || | |||||| ||||||||||| | ||||||||| || |||| Sbjct 57802 CCAGGGTACGGCCATCCTCAAGTTGTTTACCAGCAAAAATAAGTCTTTGCTGGTCTGGAG 57743 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || ||||| || ||||| ||||| || ||||| | Sbjct 57742 GGATCCCTTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCAATGGTATCAGAGCTTTCCA 57683 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || ||||| || || || || || ||||| | ||| || ||||| Sbjct 57682 CTTCGAGGGTGATAGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 57634 >seq979 Length=283929 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || || | ||| | |||||||| | || || || || || || ||||||| Sbjct 158110 TTCCTCCCCTCAATCTGAGGACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCTG 158051 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 || || | || ||| || | |||||| ||||||||||||| ||||| || || |||| Sbjct 158050 CCAGGGTACGGCCATCCTCGAGTTGTTTACCAGCAAAAATCAGCCTTTGTTGGTCTGGAG 157991 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| |||||||| Sbjct 157990 GAATCCCTTCCTTATCTTG 157972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742694440428800