Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3095 156 4e-33 seq341 143 2e-29 >seq3095 Length=123113 Score = 156 bits (172), Expect = 4e-33 Identities = 564/872 (65%), Gaps = 23/872 (3%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||||| || || ||||||| ||| ||||| ||||||||||||||||| | Sbjct 111893 TTGACATGACTGAGGCCTTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCC 111834 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTTATC 16044 | | ||| || |||||| ||||||| || ||||||||| || |||| Sbjct 111833 CCTGTAAACTGATCAATTCCATCCAATCAAATGG--GTTTTGAACATTGTATAATTTGCT 111776 Query 16045 GCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC 16104 | |||| | | | || | |||||| || |||||||| || || || |||| | ||| Sbjct 111775 GTATCCAAGTGCATTCAGCAGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATC 111716 Query 16105 ACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATT 16164 || |||||||| | | | ||| | || || | ||| | | || |||| Sbjct 111715 ACCATTCATTCCGACCAGGGCACAAGGAAGAGCATCGCAGACAAATTCCCTCTCGATATC 111656 Query 16165 AACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAAT------AA 16218 ||||| || | | | || ||| || | | | || | |||| || || Sbjct 111655 CACCGCGTC-AGCAACAAGTCCCTT--GACTCGA-TCCTCGCTGAGTTTCATCCTCAGAA 111600 Query 16219 GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTC 16278 | | | | | | |||||||||||||| || || || || || | |||||||| Sbjct 111599 GGCTGT--AGAGCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTC 111542 Query 16279 GTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAA 16338 ||||||||| || | || ||||||| ||| || ||||| | ||||||||| ||| || Sbjct 111541 GTTTGAAAAAGTTAATCCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAA 111482 Query 16339 TGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT 16398 || || ||||| || ||||| || ||||| || | | |||||| || | | Sbjct 111481 GCTTCCCGAGAAGAAAATCCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGG- 111423 Query 16399 TCTAttttta-ctttctatccattttttagcccaatttgctttttgtttAACACAGTTCA 16457 ||| | | | || ||||| ||||| || || || | |||||| | Sbjct 111422 ---ATTCTGAGCCGTCAATCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAA 111366 Query 16458 TGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTA 16517 | |||| ||||| | || | ||| || || | ||| ||||| | || | Sbjct 111365 CGGTCTCGATTGCGTGGAAAAGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAA 111306 Query 16518 TTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAG 16576 || | ||| ||||| || ||||| |||||||| || || ||||| || |||| ||||| Sbjct 111305 GAAGAAGACTGTACATCTCGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAG 111246 Query 16577 CATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACT 16636 || | || || || ||||| || || ||||| | |||| || || ||| Sbjct 111245 CA-CGCGCCTCCGAGATTTGAACCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACA 111187 Query 16637 ATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCT 16696 || || ||| || |||||||| ||||| | || ||||| |||| || || | || Sbjct 111186 ATGCCGTCGGAGGCGGCAAAAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCG 111127 Query 16697 GAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAA 16756 | | ||| ||||| | ||| | || ||||| |||||||| | |||||||| Sbjct 111126 GTCAATTTATCCCAGTGCTGTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAAC 111067 Query 16757 GAAGCAACAGCCTTTTTATACATTTTCCATAT 16788 || || | ||||| || ||||||| ||| || Sbjct 111066 GAGGCCTCTGCCTTCTTGTACATTTCCCAAAT 111035 >seq341 Length=228855 Score = 143 bits (158), Expect = 2e-29 Identities = 562/870 (65%), Gaps = 23/870 (3%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| ||||| ||| || ||||||| ||| ||||| ||||||||||| ||||| || Sbjct 2466 GACATCACTGATGCTTTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTCGTTTTCCCC 2525 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAAT--AGTATTTATCGC 16046 | || || |||||| ||||||| || |||| | ||| | | |||| | Sbjct 2526 TGCAAACTGATCAATTCCATCCAATCAAATGGGTTTT--GCACATTGTATAATTTGCTGT 2583 Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 | || | ||| ||| | || ||| || || ||||| || ||||| |||| | ||||| Sbjct 2584 ACCCAAGTTCATTCAACAGTCGATCAGCTACGAATTCAATGTACTGACTCATCAGATCAC 2643 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttt-tCTATATTA 16165 |||||| || | | | ||| | ||||| | || ||||| | || || | Sbjct 2644 CGTTCATCCCAACCAGGGCACAAGGAAGGGCTTC-GCAAACAAATTCCCTCTCAATTTCT 2702 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGGAGGGTTTAATA---AGT- 16220 || || ||| || || | | ||| | || | || || ||| || || Sbjct 2703 ACGGCATCAGCAATAATCCCCTTGACT---CGATCCTCACTCAG--TTTCATCCTCAGCA 2757 Query 16221 GTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGT 16280 | | | | | || ||||||||||| || || || || || | | || ||||||| Sbjct 2758 GGCTGTAGAGCAAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGT 2817 Query 16281 TTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATG 16340 | || || || | || ||||||| |||||| || || | ||||||||| ||| || Sbjct 2818 TCGAGAAAGTTAATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTGCGCAGAAGC 2877 Query 16341 AACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTC 16400 || || ||||| || |||||||| || || || | | |||||| | | | Sbjct 2878 TTCCCGAGAAGAAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGG--- 2934 Query 16401 TAttttta-ctttctatccattttttagcccaatttgctttttgtttAACACAGTTCATG 16459 | | | | | || ||||| ||||| || || || | | ||||| | | Sbjct 2935 -ACTCTGAGCCATCGATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACG 2993 Query 16460 TTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATT 16519 |||| ||||| | || | ||| || || | ||| ||||||| || | Sbjct 2994 GTCTCGATTGCGTGGAAAAGCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGA 3053 Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAA-GCA 16578 || | ||| ||||| || ||||| |||||||| || || || || || |||||||| ||| Sbjct 3054 AGAAGACTGTACATCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCA 3113 Query 16579 TCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTAT 16638 | ||| || || ||||| || || |||||| | || | ||| || ||| || Sbjct 3114 -CGAGCCTCCGAGATTTGAACCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGAT 3172 Query 16639 TCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGA 16698 || || || || ||||| ||||| ||||| ||||| |||| || |||| || | Sbjct 3173 GCCGTCTGAGGCGGCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGT 3232 Query 16699 AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 |||||| ||||| | ||| | || |||||||||||||| | |||||||| || Sbjct 3233 CAGTTTTTCCCAGTGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGA 3292 Query 16759 AGCAACAGCCTTTTTATACATTTTCCATAT 16788 || | || || || ||||||| ||| || Sbjct 3293 GGCCTCTGCTTTCTTGTACATTTCCCAAAT 3322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461994477979000