Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq425 87.8 1e-12 >seq425 Length=258412 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || || ||| || || || ||||||||||||||||| || ||||| ||| Sbjct 237318 CAGTTTTATGTGGCCAATGGGGAGTTATCTTGTCAAATGTATCAACGCTCAGCTGACATG 237377 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || || ||||| || || |||||| ||||| || | || | |||||||| ||| Sbjct 237378 GGTCTTGGAGTTCCATTTAACATTGCATCGTATGCCTTGTTGACATGCATGATTGCTCAT 237437 Query 20551 GTT 20553 ||| Sbjct 237438 GTT 237440 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || || || || || || ||||||||||||||||| || ||||||||| Sbjct 251597 CAGTTTTATGTGGCCAACGGGGAGTTATCTTGTCAAATGTATCAACGCTCAGCTGATATG 251538 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || || || || || || |||||| ||||| || | || | |||||||| ||| Sbjct 251537 GGTCTTGGAGTGCCATTTAACATTGCATCGTATGCCTTGTTGACATGCATGATTGCTCAT 251478 Query 20551 GTT 20553 ||| Sbjct 251477 GTT 251475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398748504601675