Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq6036 116 4e-21 seq341 107 2e-18 seq3095 96.9 3e-15 seq368 93.3 4e-14 >seq6036 Length=74774 Score = 116 bits (128), Expect = 4e-21 Identities = 85/99 (86%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| ||||||||||| ||||||||||| ||||||||||||||| ||||| || Sbjct 63487 CAAGCAAAGTCACAATGAAGTCCCTCATCTCTCGAAATAAGTTCGTTTGAGAATGTCAAG 63546 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 |||||||||| ||| || || |||| ||||||||||||| Sbjct 63547 CCTGGCATCATTCCCCGCTTCTTTAGCCAAAATATTGCA 63585 >seq341 Length=228855 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || |||||||||||||| || | ||||||||||| | || | ||||| || || ||| Sbjct 2769 AAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTT 2828 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| |||||||| || |||| |||||||||||| ||| ||| || ||| Sbjct 2829 AATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCCGAGAAG 2888 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14367 || || || ||||| ||| || || | || || || |||| || Sbjct 2889 AAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGGA 2935 >seq3095 Length=123113 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||||||||| || | |||||||||| || | ||||||||||| |||||| Sbjct 111585 CAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAAT 111526 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||| ||||| || ||||||| ||||||||| || ||| ||| || ||||| Sbjct 111525 CCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAA 111466 Query 14324 ATTCCCTCAACTGCAGCAAACGC 14346 || || || || |||||| || Sbjct 111465 ATCCCTTCGACGCAAGCAAAGGC 111443 >seq368 Length=237284 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || |||||||||||||| || ||||||||||| |||||| || ||||| ||||| || Sbjct 177708 CAAGCAAAATCACAATGGAGTCCCTCATCTCTTGAAATAAGCTCATTTGAGAATGTCAAG 177767 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 |||||||| | ||| | || || | ||||||||||||| Sbjct 177768 CCTGGCATTATTCCCCTCTTCTTAAGCCAAAATATTGCA 177806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481805885420200