Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq10374 98.7 8e-16 seq1123 95.1 9e-15 seq979 93.3 3e-14 seq203 93.3 3e-14 >seq10374 Length=62593 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| | ||||| |||| ||| || || || ||||| || ||||||||||| ||| Sbjct 59000 CCTCCCCTCAACCTAAGCACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCCGCC 58941 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | || || || ||| ||||||| || ||||| || || Sbjct 58940 AAGGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGA 58881 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || |||||||| |||| | |||||| | ||| ||||| | ||| Sbjct 58880 ATACCCTCCTTATCCTGGATTTTTGCCTTGACATTGTCAATGGTGTCCGAGCTCTCCACC 58821 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||||||||| || || |||||||||||||| Sbjct 58820 TCCAAGGTGATCGTCTTGCCGGTCAAGGTCTTCACAAAAATTTGCAT 58774 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || || |||| |||||| || |||||||| || || || ||||| ||| Sbjct 58772 CCTCCACGGAGCCTCAGAACCAAGTGAAGGGTAGATTCTTTCTGGATATTATAGTCCGCC 58713 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | ||||| || || ||||||| || || ||||| || Sbjct 58712 AGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCGAAGATAAGCCTCTGCTGATCAGGTGGG 58653 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| || | |||||| | ||| ||||| | ||| Sbjct 58652 ATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACC 58593 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| ||||| || || |||||||||||||| Sbjct 58592 TCCAAGGTGATTGTCTTGCCCGTCAAGGTCTTCACAAAAATTTGCAT 58546 >seq1123 Length=183110 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| ||||| || || |||| ||||| || || || ||||||||||| || || Sbjct 67883 CCTCCGCGTAGCCTTAGCACCAAATGAAGGGTGCTCTCCTTCTGAATGTTGTAATCTGCA 67824 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||| | || ||||| ||| | || | ||| ||||||||| ||| Sbjct 67823 AGGGTTCTGCCATCTTCAAGCTGCTTGCCAGCAAAAATCAATCTCTGTTGATCCGGGGGA 67764 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || |||||||| || | |||||| | ||| |||||| | ||| Sbjct 67763 ATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCAATCGTGTCAGAGCTCTCAACC 67704 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||| ||| |||| || || | ||||| ||||| |||||||| Sbjct 67703 TCAAGGGTAATGGTTTTCCCAGTAAGAGTTTTGACAAAGATTTGCAT 67657 >seq979 Length=283929 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| ||| ||||| |||| |||||| || || || ||||||||||| || || Sbjct 158337 TCCTCCCCTTAGCCTAAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCTGC 158278 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||| |||| || ||||||||| | || | |||||| || || ||| Sbjct 158277 TAGAGTCCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAATCTTTGCTGGTCTGGGGG 158218 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGG 18276 | ||||| || || || | | |||| | | || ||| |||||| | |||| Sbjct 158217 AATACCTTCTTTGTCCTGGATCT-TGGCTTTAACGTTGTCAATAGTGTCGGAGCTCTCGA 158159 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| |||||| | ||||| |||| || || ||||| ||||||||| Sbjct 158158 CCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTAACAAAGATTTGCATT 158109 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| | ||||| |||| ||| || || || ||||| |||||||||||||| ||| Sbjct 158792 CCTCCCCTCAACCTAAGCACCAAGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCCGCC 158733 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | || || || || ||||||| || ||||| || || Sbjct 158732 AAGGTACGGCCATCCTCAAGCTGCTTCCCAGCGAAGATAAGCCTCTGTTGGTCTGGAGGA 158673 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | | |||||| | ||| |||||| | ||| Sbjct 158672 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCAATAGTGTCTGAGCTCTCCACC 158613 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| ||||| || || |||||||||||||| Sbjct 158612 TCCAAGGTGATTGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCAT 158566 >seq203 Length=254899 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || ||||| ||||||||||| |||| || | ||| Sbjct 80198 AGGACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCGGCCATCC 80257 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | | |||||||||| || | ||||||||||| Sbjct 80258 TCCAGCTGTTTACCAGCAAAGATCAAACGTTGTTGATCCGGAGGGATCCCTTCCTTATCT 80317 Query 18234 GCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | |||| | | || ||| |||||| ||| ||| | ||| || | Sbjct 80318 TGAATCT-TAGCTTTAACATTGTCAATTGTGTCAGAACTCTCAACTTCCAAGGTTATTGT 80376 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || ||||| || || |||||||||||||| Sbjct 80377 TTTTCCTGTCAAGGTCTTGACAAAAATTTGCAT 80409 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || || || || || ||||| || || || | || | | |||||| | ||| Sbjct 79978 GTGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCAAGTTG 80037 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 |||||| ||| | ||||| |||||||| ||| || | ||||||||||| ||||| Sbjct 80038 TTTGCCTGCAAATATAAGCCTTTGTTGGTCCGGAGGGATTCCTTCCTTATCTTGAATTTT 80097 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | ||| ||||| ||| ||| | ||| || |||| || || Sbjct 80098 CGCCTTAACATTATCAATTGTGTCCGAACTCTCAACTTCCAAGGTTATAGTTTTTCCTGT 80157 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||| || || ||||| |||||||| Sbjct 80158 CAAGGTCTTGACAAAGATTTGCAT 80181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378930149328675