Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3095 192 7e-44 seq58707 105 8e-18 seq6003 102 1e-16 seq5942 102 1e-16 seq1847 89.7 6e-13 seq1602 89.7 6e-13 >seq3095 Length=123113 Score = 192 bits (212), Expect = 7e-44 Identities = 595/913 (65%), Gaps = 22/913 (2%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAA--TGATATAT 33348 || ||||||||||| || | || || || ||||| ||||| || | || |||| || Sbjct 111876 TTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCCCCTGTAAACTGATCAAT 111817 Query 33349 TTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAA 33408 | |||| ||||||| || || ||||||||| | ||| | |||| | | || | Sbjct 111816 T--CCATCCAATCAAATGGGTTTTGAACATTGTATAATTTGCTGTATCCAAGTGCATTCA 111759 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 || |||||| || || ||||| || ||| |||||| |||| ||||||||| | | Sbjct 111758 GCAGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATCACCATTCATTCCGACCA 111699 Query 33469 GTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTAT 33526 | | |||||||| | ||| | |||||| || || ||||| | | Sbjct 111698 GGGCACAAGGAAGAGCATCGCAG--ACAAATTCCCTCTCGATATCCACCGCGTCAGC--- 111644 Query 33527 AATAAATCTAACGGTTTCTTCACTCGGTGGATGTAAT----AAATGTTTAAACATCAAAC 33582 || || || | | || |||| || | | || | | | | | | || | Sbjct 111643 AACAAGTCCCTTGACTCGATC-CTCGCTGAGTTTCATCCTCAGAAGGCTGTAGAGCAGGC 111585 Query 33583 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTC 33642 | || ||||| ||||| | |||||| |||| ||||| ||||| ||||| || | || Sbjct 111584 AAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAATC 111525 Query 33643 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGA 33702 | ||||||| ||||||||||| ||||||||||| | ||| ||| || ||||| | Sbjct 111524 CAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAAA 111465 Query 33703 TTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTA 33759 | ||||| || ||||||||| | | | ||| | | | | || |||| | Sbjct 111464 TCCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGATTCTGAGCCGTCA---A 111408 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 |||| | ||||| | ||||||||| |||||||| | || || || || | | Sbjct 111407 TCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGA 111348 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33879 | || || || || | ||| || | ||| | || | | |||||| ||||| | Sbjct 111347 AAAGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACATCT 111288 Query 33880 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33939 | ||||| || || ||||| || ||||| || || || ||| | ||||| | || | Sbjct 111287 CGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGATTT 111228 Query 33940 GCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAA 33999 | || ||| | || | | |||| ||| || || || || || ||| |||| Sbjct 111227 GAACCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGGCAA 111168 Query 34000 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 34059 |||| || | ||||| || || |||| || || || || | ||||| ||| | | Sbjct 111167 AAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTGCT 111108 Query 34060 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 34119 | ||| | || | ||| || |||||| | |||||||| || ||||||||||| || | Sbjct 111107 GTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTTGT 111048 Query 34120 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTG 34179 |||| | ||| || | ||||||| |||||||| || || | || || |||||| | Sbjct 111047 ACATTTCCCAAATTTGGGGATATTGAATTGGGAACATGCAGAACCGATCTGTATTTGGGG 110988 Query 34180 CAAGGATAGGTTC 34192 ||||| ||||| Sbjct 110987 TGAGGATGGGTTC 110975 >seq58707 Length=1165 Score = 105 bits (116), Expect = 8e-18 Identities = 355/545 (65%), Gaps = 11/545 (2%) Strand=Plus/Plus Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677 ||||| ||||| || || || | ||| ||||| || |||||||| ||||||||||| Sbjct 427 ATTAACTCGTTCGAGAAAGTTAATCCATACATTAATCCTCGCTTTTTTAGCCAAAATATT 486 Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCT-- 33735 | ||| || || ||||| || ||||| || ||| ||||||| | | || Sbjct 487 GTGCAGAAGCTTCTTGAGAAGAAAATCCCTTCAACGCAAGCGAAGGCAAGTATACGCTTA 546 Query 33736 -CTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33794 || | | | || ||| ||||| | ||||| | ||||||||||| ||| Sbjct 547 GCTAAGGATTCTGAGCCGTCG---ATCCAGCGAGG-GCCCACTTGGCCTTCTTTTCCACA 602 Query 33795 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 33854 ||||| | || || || | | || || ||||| || || ||| || | |||| Sbjct 603 CAAGGAACGGTCTCGATTGTGTGGAAAAGCCTATTTTTCTCCTTCGAATCCTTGATATAA 662 Query 33855 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 33914 | || | || |||||| |||| || ||||| || || ||||| || || || || || Sbjct 663 GATTCAAGCAGAAGACTGAACATCTCGGAATGGATATTCTCAATCGCGATTTGGAACCCA 722 Query 33915 TAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTC 33973 || || | |||||| | || || || || | ||||| |||| || | || || Sbjct 723 TAAAACGCACGAGCCTCCGAGATTTGAACCTCCTTCATAAATC-TTCTGGCGAGGTTCTC 781 Query 33974 ATTCACTATTCCATCACTGGCTGCAAAAAACGCCAA-TACATGTTTTATAAAATATTTTT 34032 || || | || ||| || ||||| | ||| || || || || |||| || | Sbjct 782 CAAAACGATATCGTCTGAGGCGGCGAAAAAGGACAAGAACGTGCTTAATGAAATGCTTCT 841 Query 34033 CGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 34092 |||| | | || | ||| | | ||||| | || | ||| || |||||| || Sbjct 842 CGTCCTCGATCAAATTTTCCCAGTGCTATATATCCTGGGACAAATCGACCTCTTCCGCTC 901 Query 34093 TCCAAAA-TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGG 34151 ||||||| ||| | |||||| || || ||||| ||||| || | |||| || ||||| Sbjct 902 TCCAAAACTGAGGTCTCTGCTTTCTTGTACATTTTCCAAATTTTGGGATACTGAATTGGA 961 Query 34152 AAAAT 34156 || || Sbjct 962 AACAT 966 >seq6003 Length=93342 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| |||||||| | |||||||| || || ||||||||| | ||| | ||||| Sbjct 81095 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGTGTAAACCATCGCTGAGACAATAGATGA 81154 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||||||| |||||||| | ||| || || || || | || | ||| || Sbjct 81155 TATGTTTTGATAGCTGCATCTATATCATCCTTG-TGGATCCCAACAGAAACCCTCATCAA 81213 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||| ||||| |||||||||| || | || || || | || ||| | || | Sbjct 81214 CATGTGTTGAGGCCTTTCAACAACCTTCCCTCTGATCTTTAAGAGATACGATCTCTCAAG 81273 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||||||||||||| | | || |||||||| || || || || Sbjct 81274 AGTTTTAAAACCAAAGAAATCATAATCAAAGTCTCTGTCATATATGAT 81321 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 ||||||||||| | |||| ||| |||| ||| | |||| || |||||||| ||| || Sbjct 80735 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 80794 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || ||| ||||| || || || || | |||| | ||||| || ||| || || Sbjct 80795 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 80854 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | ||| |||||||| || ||| ||| | || || ||| | || ||||| ||| Sbjct 80855 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 80914 Query 63603 CCTTCTATGCTATCATCGATCATG 63626 || || |||||||| || ||||| Sbjct 80915 CCCTCAATGCTATCTTCTTTCATG 80938 >seq5942 Length=60911 Score = 102 bits (112), Expect = 1e-16 Identities = 361/556 (65%), Gaps = 10/556 (2%) Strand=Plus/Minus Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677 ||||| ||||| || || || | ||| | ||||| || |||||||| ||||||||||| Sbjct 58744 ATTAACTCGTTCGAGAAAGTTAATCCAGACATTAATCCTCGCTTTTTTAGCCAAAATATT 58685 Query 33678 GAAGC-GAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 | || ||| || || ||||| || ||||| ||| ||| ||||| | | | || Sbjct 58684 -ATGCAGAAGCTTCTCGAGAAGAAAATCCCTTCAACTCAAGCGAAGGCGAGTATACGCTT 58626 Query 33737 TCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA 33796 || | | | ||| ||||| | ||||| | ||||||||||| | ||| Sbjct 58625 AGCAAAGGATTCTGAGCCATCGATCCAGCGAGG-GCCCACTTGGCCTTCTTTTCCATACA 58567 Query 33797 AGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGT 33856 ||| | || || || | | || || || || || || ||| | | ||||| Sbjct 58566 AGGAACGGTCTCGATTGTGTAGAAAAGCCTATTCTTCTCCTTCGAATCCT--ATATAAGA 58509 Query 33857 ATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTA 33916 || | ||||||||| ||||| || ||||| || || ||||| || || || || | || Sbjct 58508 TTCAAGCAAAAGACTGTACATCTCGGAATGGATATTCTCAATTGCGATTTGGAACCTATA 58449 Query 33917 GAAACATCTAGCCTCGGTAATCTG-CACTTCTGTACAAAATCGTTCTGCTAAATTTTCAT 33975 || | |||||| | || || |||||| | ||||| || | | || || Sbjct 58448 AAATGCACGAGCCTCCGAGATTTGAAACTTCT-TCATAAATCTTTTGGGGAGGTTCTCCA 58390 Query 33976 TCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 34035 || || |||| ||| ||||||| | | || || || || |||| || |||| Sbjct 58389 AAACGATATCATCTGAGGCGACAAAAAAGACAAGAACGTGCTTAATGAAATGCTTCTCGT 58330 Query 34036 CTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 34095 | | | || | ||||| | ||||| | || | ||| || |||||| || ||| Sbjct 58329 C---GATCAACTTTTCCCAATGCTATATATCCTGGGACAAATCGACCTCTTCCGCTCTCC 58273 Query 34096 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAA 34155 |||| || | |||||| || || ||||| | ||| || | |||| || ||||| || | Sbjct 58272 AAAACGAGGTCTCTGCTTTCTTGTACATTTCCCAAATTTTGGGATACTGAATTGGAAACA 58213 Query 34156 TAACAAATCTATTTGG 34171 | |||| |||||| Sbjct 58212 TGCAGAATCGATTTGG 58197 >seq1847 Length=115635 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 ||||||||||| | |||| ||| |||| ||| | |||| || |||||||| ||| || Sbjct 24547 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 24606 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || ||| ||||| || || || || | |||| | ||||| || ||| || || Sbjct 24607 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 24666 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | ||| |||||||| || ||| ||| | || || ||| | || ||||| ||| Sbjct 24667 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 24726 Query 63603 CCTTCTATGCTATCATCGATCATG 63626 || || |||||||| || ||||| Sbjct 24727 CCCTCGATGCTATCTTCTTTCATG 24750 >seq1602 Length=196056 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| |||||||| | |||||||| || || ||||||||| | ||| | |||| | Sbjct 116011 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGAGTAAACCATCGCTGAGATAAGAGATGG 116070 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || | |||| | || || ||||| | ||| || || || | || | ||| ||| Sbjct 116071 TATGTTTTAATAACAGAATCGATATCATCCTTATGGATCCCAACAGAAACCCTCATCAAC 116130 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 ||||| ||||| || || |||| || | || || || || || || | || | Sbjct 116131 ATGTGTTGAGGCCTCTCCACAACCTTCCCTTGGATCTTTAAGAAATAAGACCTCTCAAGG 116190 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||||||||||| || | || |||||||| || || || || Sbjct 116191 GTTTTAAAACCAAAGTAATCATACTCAAAGTCTCTGTCATATATGAT 116237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629112873469200