Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6003 98.7 9e-16 seq3095 95.1 1e-14 seq341 95.1 1e-14 >seq6003 Length=93342 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||| ||| ||| ||||| || ||||| | |||||||||||||||| | |||||| | Sbjct 81082 TTGTGGCCTTGGTGTTCCAGCATTAAAAAGTGTAGGAGATGCATGTGTAAACCATCGCTG 81141 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 ||||| || |||||||| || | ||||||||||| | ||| || || | ||| Sbjct 81142 AGACAATAGATGATATGTTTTGATAGCTGCATCTATATCATCCTTGTGGATCCCAACAGA 81201 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTA-TTTTATTATTCTGTTTAAGTAGAT 38578 |||||||| | ||| ||||| || ||||| | | || | | | |||||| |||| Sbjct 81202 AACCCTCATCAACATGTGTTGAGGCCTTTCAACAACCTTCCCTCTGATCTTTAAG-AGAT 81260 Query 38579 ACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 ||||| | || | ||||| | ||||| || ||| | | ||||| || ||| Sbjct 81261 ACGATCTCTCAAGAGTTTTAAAACCAAAGAAATCATAATCAAAGTCTCTGTCATAT 81316 >seq3095 Length=123113 Score = 95.1 bits (104), Expect = 1e-14 Identities = 375/585 (64%), Gaps = 4/585 (1%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||||||||| |||||||| || |||| |||| || || ||||| |||||| Sbjct 111585 CAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAAT 111526 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA-CCAGAAAAGAA 11748 || ||||| ||||| || ||||||| ||||||||| || ||| | | || || ||||| Sbjct 111525 CCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCCGAGAAGAA 111467 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATAT 11808 || || || || ||||| || | || | || | | | || || Sbjct 111466 AATCCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGATTCTGAGCCGTCAAT 111407 Query 11809 CCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 ||| |||||| | || ||||| || || | || || || |||| || Sbjct 111406 CCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGAA 111347 Query 11869 TAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTC 11928 | | | || || ||| ||| ||| | || | | | ||| ||||| || Sbjct 111346 AAGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACATCTC 111287 Query 11929 TGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTG 11988 ||||| ||||| || || || || || || ||||| ||| || ||||| || || Sbjct 111286 GGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGATTTG 111227 Query 11989 TACATCCA-CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAA 12047 || || ||| || || | |||| |||||| ||||| || || | |||| Sbjct 111226 AACCTCTTTCATGAAC-CTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGGCAA 111168 Query 12048 AAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCAT 12107 |||| || || | ||| || || || | || || || | || ||||||||||| | | Sbjct 111167 AAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTGCT 111108 Query 12108 CTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167 || ||| | || ||||| || ||||| | |||||||| ||| ||| | || | Sbjct 111107 GTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTTGT 111048 Query 12168 ACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACC 12212 |||||| ||| || | |||| | ||| ||||| || ||||| Sbjct 111047 ACATTTCCCAAATTTGGGGATATTGAATTGGGAACATGCAGAACC 111003 >seq341 Length=228855 Score = 95.1 bits (104), Expect = 1e-14 Identities = 379/589 (64%), Gaps = 6/589 (1%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 || |||||||||||||| ||||| || || |||| | || | || || || || ||| Sbjct 2769 AAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTT 2828 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCAGAAAA 11745 ||||| ||||| |||||||| || |||| ||||||||| || ||| || || || || Sbjct 2829 AATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCCGAGAA 2887 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA 11805 ||| || || || || || || || | || | || || | || || | Sbjct 2888 GAAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGGACTCTGAGCCATC 2947 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||| |||||| | || ||||| | || || | || || || |||| Sbjct 2948 GATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGCGTG 3007 Query 11866 AAATAAATGCATT-TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 || || ||| || || ||| | | ||| | || | | | ||| |||| Sbjct 3008 GAA-AAGCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGTACA 3066 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 | || ||||| ||||| || || || ||||| || ||||| || || ||||| || Sbjct 3067 TCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCGAGA 3126 Query 11985 ACTGTACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043 || || ||| ||| || ||| | || | ||||| || || || || | Sbjct 3127 TTTGAACCTCCTTCAT-GAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGGCG 3185 Query 12044 GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAA 12103 || ||||| || || || || || || || | || ||||| | ||| | ||| ||||| Sbjct 3186 GCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCAG 3245 Query 12104 TCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGT 12163 | | || ||| | || ||||| || ||||| | |||||||| ||| ||| || Sbjct 3246 TGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTTC 3305 Query 12164 TTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACC 12212 || ||||||| ||| || | |||||| ||| || || || ||||| Sbjct 3306 TTGTACATTTCCCAAATTTTGGGATACTGAATTGGAAACATGCAGAACC 3354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468000550031600