Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3095 206 3e-48 seq341 163 4e-35 seq58707 118 1e-21 seq6003 111 2e-19 seq1847 111 2e-19 seq1602 107 3e-18 >seq3095 Length=123113 Score = 206 bits (228), Expect = 3e-48 Identities = 575/874 (66%), Gaps = 16/874 (2%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAA--TGATATAT 35924 || ||||||||||| || | || || || ||||| ||||| || | ||| |||| || Sbjct 111876 TTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCCCCTGTAAACTGATCAAT 111817 Query 35925 TTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAA 35984 | |||| |||| ||||| || |||||| || | ||| | |||| | | || | Sbjct 111816 T--CCATCCAATCAAATGGGTTTTGAACATTGTATAATTTGCTGTATCCAAGTGCATTCA 111759 Query 35985 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 36044 || |||||| || |||||||| || ||| |||||| |||| ||||||||| | | Sbjct 111758 GCAGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATCACCATTCATTCCGACCA 111699 Query 36045 GTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 36102 | | |||||||| | ||| | |||||| || ||| |||||||| | | Sbjct 111698 GGGCACAAGGAAGAGCATCGCAG--ACAAATTCCCTCTCGATATCCACCGCGTCAGCAAC 111641 Query 36103 AATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 36162 || | ||| || || || || | | | | | | | || || || Sbjct 111640 AAGTCCCTTGACTCGATCCTCGCTGAGTTTCATCCTCAGAAGGCTGTAGAGCAGGCAAGC 111581 Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222 ||||| ||||||| |||||| |||| ||||| ||||| ||||| || | ||| || Sbjct 111580 AAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAATCCAGG 111521 Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTC 36281 ||||| ||||||||||| ||||||||||| | |||| | | | || || |||||||| | Sbjct 111520 CATTAATCCACGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAAAATCC 111462 Query 36282 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCC 36338 |||| || |||||||| | | | ||| | | | | | |||| |||| Sbjct 111461 CTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGATTCTGAGCCGTCA---ATCC 111405 Query 36339 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 36398 | | ||||| | ||||||||| |||||||| | ||||| || || | || | Sbjct 111404 AGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGAAAA 111345 Query 36399 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 36458 | || || || | ||| || | ||| | |||| | |||||| ||||| || | Sbjct 111344 GCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACATCTCGG 111285 Query 36459 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 36518 |||| || || ||||| || || || || || || ||| | ||||| | || || | Sbjct 111284 AATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGATTTGAA 111225 Query 36519 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 36578 | ||| | || | | |||| ||| || || || ||||| ||| ||||||| Sbjct 111224 CCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGGCAAAAA 111165 Query 36579 ACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGA 36638 | || | ||||| || || |||| || || | || | ||||| ||| | | | Sbjct 111164 AGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTGCTGTA 111105 Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 36698 ||| | || | ||| || |||||| | |||||||| || ||||||||||| || |||| Sbjct 111104 CATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTTGTACA 111045 Query 36699 TATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 | | ||| || | ||||||||||||| || || Sbjct 111044 TTTCCCAAATTTGGGGATATTGAATTGGGAACAT 111011 >seq341 Length=228855 Score = 163 bits (180), Expect = 4e-35 Identities = 388/582 (67%), Gaps = 6/582 (1%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || || ||||| ||||||| ||||| |||| | || || ||||| || || || Sbjct 2768 CAAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGT 2827 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 36272 | ||| ||||||| || ||||| || ||||||||||| | |||| | | | || || | Sbjct 2828 TAATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCCCGAGA 2886 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--C 36330 ||||||| ||||| || || ||||| | | | ||| || | | | ||| | Sbjct 2887 AGAAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAG--GACTCTGAGCC 2944 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 || ||||| | ||||| | ||||||||| | |||||||| | ||||| || || Sbjct 2945 ATCGATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGC 3004 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 | || || || || || | ||| || | ||| | |||| | |||||| || Sbjct 3005 GTGGAAAAGCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGTA 3064 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 ||| || ||||| || || ||||| || ||||| || || || || | |||||| | Sbjct 3065 CATCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCGA 3124 Query 36511 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 36570 || || || || | || | | | || | || || || || ||||| ||| Sbjct 3125 GATTTGAACCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGGC 3184 Query 36571 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCA 36630 || ||||| || | | || || || |||| || |||| || ||||| | ||| Sbjct 3185 GGCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCA 3244 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 | | ||||| | || | ||| || |||||| | |||||||| || |||||||| || Sbjct 3245 GTGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTT 3304 Query 36691 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || ||||| | ||| || | |||| ||||||||||| || Sbjct 3305 CTTGTACATTTCCCAAATTTTGGGATACTGAATTGGAAACAT 3346 >seq58707 Length=1165 Score = 118 bits (130), Expect = 1e-21 Identities = 361/545 (66%), Gaps = 11/545 (2%) Strand=Plus/Plus Query 36194 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 36253 ||||| ||||| || || || | ||| ||||| || |||||||| ||||||||||| Sbjct 427 ATTAACTCGTTCGAGAAAGTTAATCCATACATTAATCCTCGCTTTTTTAGCCAAAATATT 486 Query 36254 GACGCAAATGATCCA-GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 36312 | ||| | | | | || |||||||| ||||| || || ||||||| | | || Sbjct 487 GT-GCAGAAGCTTCTTGAGAAGAAAATCCCTTCAACGCAAGCGAAGGCAAGTATACGCTT 545 Query 36313 TCCATAACCGGCACTGTCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 36370 | ||| | ||| || ||||| | ||||| | ||||||||||| ||| Sbjct 546 AGC-TAAG-GATTCTGAGCCGTCGATCCAGCGAGG-GCCCACTTGGCCTTCTTTTCCACA 602 Query 36371 CAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAT 36430 ||||| | ||||| || | | || || ||||| || || ||| || | ||| Sbjct 603 CAAGGAACGGTCTCGATTGTGTGGAAAAGCCTATTTTTCTCCTTCGAATCCTTGATATAA 662 Query 36431 GTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCG 36490 | |||| || |||||| |||| || ||||| || || ||||| || ||||| || || Sbjct 663 GATTCAAGCAGAAGACTGAACATCTCGGAATGGATATTCTCAATCGCGATTTGGAACCCA 722 Query 36491 TAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTC 36549 || || | |||||| | || || || || | ||||| |||| || | || || Sbjct 723 TAAAACGCACGAGCCTCCGAGATTTGAACCTCCTTCATAAATC-TTCTGGCGAGGTTCTC 781 Query 36550 ATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA-TACATGTTTTATAAAATATTTTT 36608 || || |||| ||| || ||||| | ||| || || || || |||| || | Sbjct 782 CAAAACGATATCGTCTGAGGCGGCGAAAAAGGACAAGAACGTGCTTAATGAAATGCTTCT 841 Query 36609 CGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 36668 ||| | | || | ||| | | ||||| | || | ||| || |||||| || Sbjct 842 CGTCCTCGATCAAATTTTCCCAGTGCTATATATCCTGGGACAAATCGACCTCTTCCGCTC 901 Query 36669 TCCAAAA-TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 36727 ||||||| ||| | |||||| || || ||||| ||||| || | |||| ||||||||| Sbjct 902 TCCAAAACTGAGGTCTCTGCTTTCTTGTACATTTTCCAAATTTTGGGATACTGAATTGGA 961 Query 36728 AAAAT 36732 || || Sbjct 962 AACAT 966 >seq6003 Length=93342 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||||||||| | |||| ||| |||| ||| | |||| || |||||||| ||| ||| Sbjct 80735 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 80794 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 ||||||| ||||| || || || || |||||| | ||||| || ||| || || Sbjct 80795 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 80854 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| |||||||| || ||| ||| | || || ||| | |||||||| ||| Sbjct 80855 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 80914 Query 66396 CCCTCTATACTATCATCCATCATG 66419 ||||| || ||||| || ||||| Sbjct 80915 CCCTCAATGCTATCTTCTTTCATG 80938 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| |||||||| | |||||||| || || ||||||||| | ||| | ||||| Sbjct 81095 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGTGTAAACCATCGCTGAGACAATAGATGA 81154 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || | ||||||| |||||||| | ||| || || || || | || | ||| || Sbjct 81155 TATGTTTTGATAGCTGCATCTATATCATCCTTG-TGGATCCCAACAGAAACCCTCATCAA 81213 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||| ||||| |||||||| | ||| | || || || | || ||| | || | Sbjct 81214 CATGTGTTGAGGCCTTTCAACAACCTTCCCTCTGATCTTTAAGAGATACGATCTCTCAAG 81273 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||||||||||||| | | || |||||||| || || || || Sbjct 81274 AGTTTTAAAACCAAAGAAATCATAATCAAAGTCTCTGTCATATATGAT 81321 >seq1847 Length=115635 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||||||||| | |||| ||| |||| ||| | |||| || |||||||| ||| ||| Sbjct 24547 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 24606 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 ||||||| ||||| || || || || |||||| | ||||| || ||| || || Sbjct 24607 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 24666 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| |||||||| || ||| ||| | || || ||| | |||||||| ||| Sbjct 24667 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 24726 Query 66396 CCCTCTATACTATCATCCATCATG 66419 ||||| || ||||| || ||||| Sbjct 24727 CCCTCGATGCTATCTTCTTTCATG 24750 >seq1602 Length=196056 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || |||||||| | |||| ||| || | ||| | ||||||| |||||||| ||||||| Sbjct 115645 CCCCCCTGATCCACATATCGAGCTGTATCATTGAACACTCTCAGCATTGGAACAATACCA 115704 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 ||||| || ||||| || || ||||| |||||| ||||||| || ||| | || Sbjct 115705 TTGGAGGTCCCATTTGTTCCACGAATATAACTTCCAGTTGCACGGATGTTATGCACAGAG 115764 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| || || ||| ||| | || || || | |||||||| ||| Sbjct 115765 ACACCAATTCCTCCGGCTGATTTGCTGATGACAGCACACTCCTTCAGTGTATCATATATG 115824 Query 66396 CCCTCTATACTATCATCCATCATG 66419 ||||| || ||||| || ||||| Sbjct 115825 CCCTCAATGCTATCCTCTTTCATG 115848 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| |||||||| | |||||||| || || ||||||||| | ||| | |||| | Sbjct 116011 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGAGTAAACCATCGCTGAGATAAGAGATGG 116070 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || | |||| | || || ||||| | ||| || || || | || | ||| ||| Sbjct 116071 TATGTTTTAATAACAGAATCGATATCATCCTTATGGATCCCAACAGAAACCCTCATCAAC 116130 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 ||||| ||||| || || || | ||| | || || || || || || | || | Sbjct 116131 ATGTGTTGAGGCCTCTCCACAACCTTCCCTTGGATCTTTAAGAAATAAGACCTCTCAAGG 116190 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 |||||||||||||| || | || |||||||| || || || || Sbjct 116191 GTTTTAAAACCAAAGTAATCATACTCAAAGTCTCTGTCATATATGAT 116237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657436345772600