Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4136 113 4e-20 seq7954 111 2e-19 seq1123 95.1 1e-14 seq203 95.1 1e-14 seq979 93.3 4e-14 seq10374 91.5 1e-13 seq646 87.8 2e-12 seq3688 82.4 8e-11 >seq4136 Length=93312 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||||||||| || || Sbjct 35622 CCTCCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGCA 35681 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||| || ||||||||||||||| |||| || | ||||| || ||||| Sbjct 35682 AGGGTACGCCCGTCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGAGGG 35741 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || ||| || |||| | || | ||||||| | |||||| Sbjct 35742 ATCCCTTCTTTATCTTGGATCTTAGCCTTTACATTATCGATGGTGTCGGAGCTTTCCACC 35801 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||||||||| | ||||| ||||| || ||||| Sbjct 35802 TCAAGGGTGATGGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCAT 35848 >seq7954 Length=38498 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||| | ||| | || || || ||||| ||||||||||| | Sbjct 10586 CCGCCACGAAGACGGAGAACCAGGTGCAGGGTCGATTCCTTTTGGATGTTATAATCCGCC 10645 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || || ||||| ||||| ||| |||||| |||||| || || || || Sbjct 10646 AGTGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 10705 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | |||||||| | ||||||| Sbjct 10706 ATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTATCGATTGTGTCGGAGCTCTCCACC 10765 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | || || ||||||| || || ||||| ||||||||| || Sbjct 10766 TCCAAAGTGATGGTTTTTCCGGTCAGGGTCTTCACGAAGATTTGCATACCT 10816 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | || || || ||||| || || ||||| || ||| | || | ||||| Sbjct 10148 ACCAAGTGCAATGTGGATTCCTTTTGGATATTGTAATCAGCCAGTGTTCGTCCA-TCTTC 10206 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| |||||| | || || | || || || || || ||||| || ||||| | Sbjct 10207 GAGCTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTC-CT 10265 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | |||| ||| | | || | |||||||| ||||||||| | || | || | Sbjct 10266 GAATCTTTGCTTTCACATTGTCAATTGTGTCGGAACTCTCCACCTCCAAAGTGATGGTTT 10325 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||||| || || ||||| |||||||| Sbjct 10326 TTCCGGTCAGGGTCTTCACGAAGATTTGCAT 10356 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| |||||||| || || || | || |||||||| || || Sbjct 10844 GTTGACTCCTTTTGGATGTTATAGTCTGCCAACGTACGACCATCCTCGAGCTGCTTTCCG 10903 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||||| |||||||| || || || || ||||||||||| ||| | |||| ||| Sbjct 10904 GCGAAGATCAATCGTTGCTGGTCCGGTGGAATTCCTTCTTTGTC-CTGAATCTTTGCTTT 10962 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | ||||||| ||| ||||| | || | ||||||||||| | || Sbjct 10963 TACATTATCAATCGTGTCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCGGTAAGGGT 11022 Query 139747 TTTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 11023 CTTAACAAAGATCTGCAT 11040 >seq1123 Length=183110 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| ||||| | || ||||| || || ||||||||||| Sbjct 67656 GCCTCCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCCTTCTGTATGTTATAATCAGC 67597 Query 139597 CATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || |||| |||||||| || || |||||| ||||||| | ||| || || || Sbjct 67596 AAGGGT--TCGACCATCTTCGAGTTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCTGGT 67539 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || ||||||||||| ||| || ||||| | || | || || | ||| Sbjct 67538 GGAATTCCTTCTTTGTCTTGGATCTTGGCTTTTACATTGTCAATGGTATCAGAACTTTCC 67479 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||| || || | ||||| ||||| |||||||| Sbjct 67478 ACCTCTAGGGTGATGGTCTTTCCAGTTAGGGTTTTGACGAAGATTTGCAT 67429 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| | ||| | ||| | ||||| ||||| || || || ||||| ||||| | Sbjct 69023 CCGCCTCTGAGACGGAGAACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCC 68964 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || ||||| || || ||| |||||| | ||||| || || || Sbjct 68963 AAAGTCCTTCCATCCTCCAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCAGGTGGG 68904 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||| | | ||||||| Sbjct 68903 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCTATGGTGTCAGAGCTCTCCACC 68844 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| || || | ||||| ||||||||||||||| Sbjct 68843 TCGAGGGTAATAGTCTTCCCCGTGAGTGTTTTAACGAATATTTGCATA 68796 >seq203 Length=254899 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| ||||| ||||| || || || || | || || |||||||||||| Sbjct 80213 GTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCGGCCATCCTCCAGCTGTTTACCA 80272 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| |||||| ||||| ||||| || ||||| || || ||| | || | ||| Sbjct 80273 GCAAAGATCAAACGTTGTTGATCCGGAGGGATCCCTTCCTTATC-TTGAATCTTAGCTTT 80331 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | || | |||||| | ||| || || | ||| | || || || ||||| || Sbjct 80332 AACATTGTCAATTGTGTCAGAACTCTCAACTTCCAAGGTTATTGTTTTTCCTGTCAAGGT 80391 Query 139747 TTTTACGAATATTTGCATA 139765 || || || ||||||||| Sbjct 80392 CTTGACAAAAATTTGCATA 80410 >seq979 Length=283929 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| || ||||| || || ||||| ||||| || || | || ||| Sbjct 158090 ACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTACGGCCATCCTCG 158031 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || |||||||||||| | ||||| | ||| || || ||||| || ||||| || || | Sbjct 158030 AGTTGTTTACCAGCAAAAATCAGCCTTTGTTGGTCTGGAGGAATCCCTTCCTTATCTTGG 157971 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| |||| | || | || |||| | |||||||| | || | |||||| Sbjct 157970 ATTTTAGCCTTTACGTTGTCAATGGTATCGGAGCTTTCCACCTCGAGAGTGATGGTCTTG 157911 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||| ||||| || ||||| Sbjct 157910 CCAGTCAAGGTTTTCACGAAAATCTGCAT 157882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | ||||||||||| |||||||| || || || || | || || Sbjct 158774 ACCAAGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCCGCCAAGGTACGGCCATCCTCA 158715 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| |||| || | || || || ||||| || || || ||||| | Sbjct 158714 AGCTGCTTCCCAGCGAAGATAAGCCTCTGTTGGTCTGGAGGAATACCCTCCTTGTCCTGG 158655 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || ||| || | | || | ||||| | | ||||||||| | ||| | |||||| Sbjct 158654 ATCTTTGCCTTGACATTATCAATAGTGTCTGAGCTCTCCACCTCCAAGGTGATTGTCTTG 158595 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || ||||| || || || || ||||||||| || Sbjct 158594 CCTGTCAAGGTCTTGACAAAAATTTGCATACCT 158562 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| || || ||||| || ||||| || || || || | || || Sbjct 158547 AACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGCCAGAGTACGGCCATCCTC 158488 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||||| ||||| |||| || | |||||||| || || ||||| || || || Sbjct 158487 AAGCTGTTTTCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGGATGCCCTCCTTATCCTG 158428 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | |||||| | | |||||||||| || | ||||| Sbjct 158427 GATCTTGGCCTTAACGTTGTCAATTGTGTCTGAGCTTTCCACCTCAAGAGTAATGGTCTT 158368 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| || || || ||||| Sbjct 158367 GCCGGTCAGGGTTTTGACAAAGATCTGCAT 158338 >seq10374 Length=62593 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | ||||||||||| || ||||| || || || || | || || Sbjct 58982 ACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCCGCCAAGGTACGGCCATCCTCA 58923 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || |||||| |||| || | || || || || || || || || || || | Sbjct 58922 AGCTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGG 58863 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 |||||| || | | || | ||||| | | ||||||||| | ||| | ||||||| Sbjct 58862 ATTTTTGCCTTGACATTGTCAATGGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTCTTG 58803 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||||| || || || || ||||||||| || Sbjct 58802 CCGGTCAAGGTCTTCACAAAAATTTGCATACCT 58770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| || ||||| || || ||||| ||||| || || | || || Sbjct 57842 ACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTACGGCCATCCTCA 57783 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || |||||||||||| | || || | |||||| || ||||| || ||||| ||||| | Sbjct 57782 AGTTGTTTACCAGCAAAAATAAGTCTTTGCTGGTCTGGAGGGATCCCTTCCTTGTCTTGG 57723 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || |||| | || | || || | | ||||| || | ||| | |||||| Sbjct 57722 ATCTTGGCCTTTACGTTGTCAATGGTATCAGAGCTTTCCACTTCGAGGGTGATAGTCTTG 57663 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||| ||||| || ||||| Sbjct 57662 CCAGTCAAGGTTTTCACGAAAATCTGCAT 57634 >seq646 Length=154290 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || ||||||||||| || || ||| | ||| || Sbjct 48596 ACCAAGTGCAGAGTTGACTCCTTCTGAATGTTATAGTCTGCCAATGTTCGGCCGTCCTCA 48655 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| |||||||| ||||||| | |||||| || || || || || || ||||| | Sbjct 48656 AGCTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 48715 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGC-TCCACCTCAACGGTCACCGTCTT 139734 ||||| ||| | | || | ||||||| | | || || |||| ||| | ||||| Sbjct 48716 ATTTTAGCTTTGACATTATCAATAGTGTCGGAGCTCTTCGACTTCAAGGGTAATTGTCTT 48775 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| || || || ||||| Sbjct 48776 CCCAGTGAGGGTTTTGACAAAAATCTGCAT 48805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || ||||| | || ||||| || |||||||| ||||| || || | || Sbjct 48821 CAACACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTACGGCCATC 48880 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || |||||||||||||| |||| || | || || || || || |||||||| ||||| Sbjct 48881 CTCAAGCTGTTTACCAGCGAAGATAAGCCTCTGTTGGTCCGGTGGGATGCCTTCCTTGTC 48940 Query 139672 GGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 || | || | |||| | | || | ||||||| | ||||||||| | || | | Sbjct 48941 -TTGTATCTTGGCTTTAACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATGG 48999 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || ||||| | || || ||||| || |||||| Sbjct 49000 TTTTCCCGGTAAGGGTCTTGACGAAAATCTGCATA 49034 >seq3688 Length=93992 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| ||||||||||| || ||| | || || ||| || | |||||| || Sbjct 93750 GTAGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCCAACTGTTTTCCT 93691 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | || || || ||||| || || || ||||| || ||||| ||| || || Sbjct 93690 GCGAAAATAAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 93631 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| ||| ||||| | || | |||||| ||||| | ||| Sbjct 93630 ACATTATCGATTGTGTCGGAACTCTCAACCTCGAGAGTAATCGTCTTACCGGTTAGGGTT 93571 Query 139748 TTTACGAATATTTGCATAGC 139767 || || || || |||||||| Sbjct 93570 TTCACAAAGATCTGCATAGC 93551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495508935388000