Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq6036 116 4e-21 seq341 107 2e-18 seq368 95.1 1e-14 seq3095 91.5 1e-13 >seq6036 Length=74774 Score = 116 bits (128), Expect = 4e-21 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||||||||| ||||||||||| ||||||||||||||| ||||| || Sbjct 63487 CAAGCAAAGTCACAATGAAGTCCCTCATCTCTCGAAATAAGTTCGTTTGAGAATGTCAAG 63546 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||||||||| ||| || || |||| ||||||||||||| |||| Sbjct 63547 CCTGGCATCATTCCCCGCTTCTTTAGCCAAAATATTGCA-CAAA 63589 >seq341 Length=228855 Score = 107 bits (118), Expect = 2e-18 Identities = 370/566 (65%), Gaps = 17/566 (3%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || |||||||||||||| || | ||||||||||| | || | ||||| || || ||| Sbjct 2769 AAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTT 2828 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAA 13987 ||||| ||||| |||||||| || |||| |||||||||||| ||| || || || || Sbjct 2829 AATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCCGAGAA 2887 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||| || || ||||| ||| || || | || || || |||| || | || Sbjct 2888 GAAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGGA-----CTCTGAG 2942 Query 14048 CGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 | || ||||| ||||| | | || || | | | || | || || || Sbjct 2943 CCATCGATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATT 3002 Query 14106 GCAT-TAAATAAATATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAG 14162 || | ||| |||| |||||| | | | |||| || || | |||| ||| | Sbjct 3003 GCGTGGAAAAGCCTATT-CTTCTCCTCCGAATCCTTG--ATATAAGATTCAAGAAGAAGA 3059 Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA-GCATCTAGC 14221 || ||||| ||||| || || || || || || || || || |||||||| ||| | ||| Sbjct 3060 CTGTACATCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCA-CGAGC 3118 Query 14222 TTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14281 ||||| ||| || ||| || ||| | || | || || ||| || || || Sbjct 3119 CTCCGAGATTTGAACCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTC 3178 Query 14282 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14341 || || ||||| || | |||| ||||| || | | ||| || | | ||||| Sbjct 3179 TGAGGCGGCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTT 3238 Query 14342 TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 || ||| | || ||||| || | ||| || || || | |||||||| || | Sbjct 3239 TTCCCAGTGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTC 3298 Query 14402 AGCTTTTTTATACATTACCCATATTT 14427 ||||| || |||||| |||| |||| Sbjct 3299 TGCTTTCTTGTACATTTCCCAAATTT 3324 >seq368 Length=237284 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || |||||||||||||| || ||||||||||| |||||| || ||||| ||||| || Sbjct 177708 CAAGCAAAATCACAATGGAGTCCCTCATCTCTTGAAATAAGCTCATTTGAGAATGTCAAG 177767 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||||||| | ||| | || || | ||||||||||||| |||| Sbjct 177768 CCTGGCATTATTCCCCTCTTCTTAAGCCAAAATATTGCA-CAAA 177810 >seq3095 Length=123113 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||| || | |||||||||| || | ||||||||||| |||||| Sbjct 111585 CAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAAT 111526 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||| ||||| || ||||||| ||||||||| || ||| || || || ||||| Sbjct 111525 CCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCCGAGAAGAA 111467 Query 13991 TATTCCCTCAACTGCAGCAAACGC 14014 || || || || |||||| || Sbjct 111466 AATCCCTTCGACGCAAGCAAAGGC 111443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479191214351000