Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq341 120 3e-22 seq6036 116 4e-21 seq3095 96.9 3e-15 seq368 93.3 4e-14 >seq341 Length=228855 Score = 120 bits (132), Expect = 3e-22 Identities = 366/563 (65%), Gaps = 11/563 (2%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || |||||||||||||| || | ||||||||||| | || | ||||| || || ||| Sbjct 2769 AAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTT 2828 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| ||||| |||||||| || |||| |||||||||||| ||| ||| || ||| Sbjct 2829 AATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCCGAGAAG 2888 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || || || ||||| ||| || || | || || || |||| || | || Sbjct 2889 AAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGGA-----CTCTGAGC 2943 Query 13837 GAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 || ||||| ||||| | | || || | | | || | || ||||||| Sbjct 2944 CATCGATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTG 3003 Query 13895 CATTGAATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCT 13952 | | ||| | | |||||| | | | |||| || || | |||| ||| | || Sbjct 3004 CGTGGAAAAGCCTATTCTTCTCCTCCGAATCCTTG--ATATAAGATTCAAGAAGAAGACT 3061 Query 13953 ATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 ||||| ||||| || || || || || || || || || |||||||| | ||| || Sbjct 3062 GTACATCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTC 3121 Query 14013 TGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACT 14072 || ||| |||||| || ||| | || | ||| || ||| || || || Sbjct 3122 CGAGATTTGAACCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGA 3181 Query 14073 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14132 || || ||||| || | |||| ||||| || | | ||| || | | ||||||| Sbjct 3182 GGCGGCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTC 3241 Query 14133 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 ||| | || ||||| || | ||| || || || | |||||||| || | || Sbjct 3242 CCAGTGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGC 3301 Query 14193 TTTTTTATACATTACCCATATTT 14215 ||| || |||||| |||| |||| Sbjct 3302 TTTCTTGTACATTTCCCAAATTT 3324 >seq6036 Length=74774 Score = 116 bits (128), Expect = 4e-21 Identities = 85/99 (86%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||||||||| ||||||||||| ||||||||||||||| ||||| || Sbjct 63487 CAAGCAAAGTCACAATGAAGTCCCTCATCTCTCGAAATAAGTTCGTTTGAGAATGTCAAG 63546 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||||| ||| || || |||| ||||||||||||| Sbjct 63547 CCTGGCATCATTCCCCGCTTCTTTAGCCAAAATATTGCA 63585 >seq3095 Length=123113 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||||||||| || | |||||||||| || | ||||||||||| |||||| Sbjct 111585 CAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAAT 111526 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||| ||||| || ||||||| ||||||||| || ||| ||| || ||||| Sbjct 111525 CCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAA 111466 Query 13780 ATTCCCTCAACTGCAGCAAACGC 13802 || || || || |||||| || Sbjct 111465 ATCCCTTCGACGCAAGCAAAGGC 111443 >seq368 Length=237284 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || |||||||||||||| || ||||||||||| |||||| || ||||| ||||| || Sbjct 177708 CAAGCAAAATCACAATGGAGTCCCTCATCTCTTGAAATAAGCTCATTTGAGAATGTCAAG 177767 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||| | ||| | || || | ||||||||||||| Sbjct 177768 CCTGGCATTATTCCCCTCTTCTTAAGCCAAAATATTGCA 177806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478053289044600