Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1123 113 3e-20 seq10374 107 1e-18 seq979 104 2e-17 seq7954 95.1 9e-15 seq203 87.8 1e-12 seq4136 82.4 6e-11 >seq1123 Length=183110 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || |||| |||||| || | ||||||||||| || | ||||||||| | Sbjct 68111 CCTCCACGGAGCCTTAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATATTGTAATCCGCA 68052 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || || | |||||||| ||||||||||||| ||| || || | || Sbjct 68051 AGTGTTCTGCCATCTTCTAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCCGGAGGA 67992 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || ||| | ||||| || ||| ||||| | || || Sbjct 67991 ATGCCCTCTTTGTCCTGGATTTTTGCCTTGACGTTGTCAATAGTGTCAGAACTTTCCACC 67932 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||||| || || || || || ||||||||||||||||| Sbjct 67931 TCAAGTGTTATAGTCTTCCCTGTAAGGGTCTTCACAAAAATTTGCAT 67885 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || || |||| ||||||||| | ||||||||||| || | |||||||| | Sbjct 67884 GCCTCCGCGTAGCCTTAGCACCAAATGAAGGGTGCTCTCCTTCTGAATGTTGTAATCTGC 67825 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | || || | || ||||| ||||||||||||| ||||||||| | || Sbjct 67824 AAGGGTTCTGCCATCTTCAAGCTGCTTGCCAGCAAAAATCAATCTCTGTTGATCCGGGGG 67765 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || || || || |||| | ||||| || ||| ||||| ||| ||| | Sbjct 67764 AATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCAATCGTGTC-AGAGCTCTCAA 67706 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| || || |||||||| ||||| |||||||| Sbjct 67705 CCTCAAGGGTAATGGTTTTCCCAGTAAGAGTTTTGACAAAGATTTGCAT 67657 >seq10374 Length=62593 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | |||||||||||| || | |||||||| | | ||||| | || || Sbjct 58299 CACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGCTAGAGTACGGCCATCCTC 58240 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || ||||| ||||||||||||| || || || | || | ||| ||||| || Sbjct 58239 CAGCTGCTTGCCTGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCCTCTTTGTCCTG 58180 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| ||||||| || ||| ||||| ||| |||||| || | ||||| || | Sbjct 58179 GATCTTGGCTTTGACGTTGTCAATGGTGTC-AGAGCTCTCGACCTCGAGAGTTATGGTCT 58121 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || || ||||| ||||| |||||||| Sbjct 58120 TGCCAGTCAGGGTTTTAACAAAGATTTGCAT 58090 Score = 102 bits (112), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||| |||| || || | | |||| ||||||||||| || ||||| Sbjct 59193 CTCCTTTTGGATGTTGTAGTCGGCCAGGGTCCTTCCGTCCTCCAATTGTTTCCCAGCAAA 59134 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 ||||||||||| || || | || | ||| ||||| || |||| || | || || Sbjct 59133 GATCAATCGCTGCTGGTCTGGTGGAATACCCTCTTTGTC-CTGAATCTTAGCCTTCACAT 59075 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 || ||| ||||| | ||| || || | || ||||| ||||| || | ||| || | Sbjct 59074 TGTCAATGGTGTCAGAACTCTCCACCTCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTAA 59015 Query 43097 CAAAAATTTGCAT 43109 ||||||||||||| Sbjct 59014 CAAAAATTTGCAT 59002 >seq979 Length=283929 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || | |||||| || | |||||||||||| || | |||||||| | Sbjct 158336 CCTCCCCTTAGCCTAAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCTGCT 158277 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| || ||||| ||||||||||||| || || || | || Sbjct 158276 AGAGTCCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAATCTTTGCTGGTCTGGGGGA 158217 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||||||| || |||| |||| || || ||| |||||| ||| |||||| Sbjct 158216 ATACCTTCTTTGTCCTGGATCTTGGCTTTAACGTTGTCAATAGTGTCG-GAGCTCTCGAC 158158 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || || || || || || ||||| ||||||||| Sbjct 158157 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTAACAAAGATTTGCATT 158109 >seq7954 Length=38498 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||| || | ||| |||||||| | ||||||||| | Sbjct 10129 GCCACCACGAAGGCGGAGGACCAAGTGCAATGTGGATTCCTTTTGGATATTGTAATCAGC 10188 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||| ||| | || || | ||||| || |||||||| | | |||||| || | || Sbjct 10189 CAGTGTTCGTCCATCTTCGAGCTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGG 10248 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | || || || || |||| || |||| || || ||| ||||||| | ||| | Sbjct 10249 GATGCCCTCCTTGTC-CTGAATCTTTGCTTTCACATTGTCAATTGTGTCGGAACTCTCCA 10307 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||||||||| || || ||||| || |||||||| Sbjct 10308 CCTCCAAAGTGATGGTTTTTCCGGTCAGGGTCTTCACGAAGATTTGCAT 10356 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||| || | ||| ||||||||| | ||||||||||| Sbjct 10357 GCCACCACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAATCGGC 10416 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||| | | | || || | |||||| || |||||||| | || ||||| || | || Sbjct 10417 CAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATGAGTCTTTGTTGGTCCGGTGG 10476 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | || || || || ||| ||| | || || | ||| ||||||| | ||| | Sbjct 10477 GATGCCCTCCTTGTC-CTGAATCTTAGCCTTCACATTATCAATTGTGTCGGAACTCTCCA 10535 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || |||||||| || || || || |||||||||||||| Sbjct 10536 CCTCCAAAGTAATGGTTTTTCCCGTCAGGGTCTTGACAAAAATTTGCAT 10584 >seq203 Length=254899 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||| |||| || ||||||||| | ||||| || | Sbjct 80182 GCCACCACGAAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGC 80241 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || |||| ||||| || ||||| ||||| || |||||||| | || Sbjct 80242 CAGAGTCCGGCCATCCTCCAGCTGTTTACCAGCAAAGATCAAACGTTGTTGATCCGGAGG 80301 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| |||| || || ||| |||||| | ||| || Sbjct 80302 GATCCCTTCCTTATCTTGAATCTTAGCTTTAACATTGTCAATTGTGTCAGAACTCTCAAC 80361 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| |||||||| || | || || |||||||||||||| Sbjct 80362 TTCCAAGGTTATTGTTTTTCCTGTCAAGGTCTTGACAAAAATTTGCAT 80409 >seq4136 Length=93312 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || |||||||| |||| |||| ||||||||| | ||| || || | | Sbjct 34710 CCACCACGAAGCCTCAACACCAAGTGGAGAGTGGACTCCTTTTGAATATTATAGTCAGCC 34769 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | ||||| || || || || | | |||||| || | || Sbjct 34770 AAAGTACGGCCATCCTCAAGCTGTTTACCAGCGAAGATAAGCCTCTGTTGGTCTGGTGGG 34829 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGAC 43061 | || || || || ||| | || || | ||| |||||| ||| | | || Sbjct 34830 ATGCCCTCCTTGTCTTGGATTTTAGCCTTAACATTATCAATGGTGTCGG-AGCTTTCAAC 34888 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || |||||||| || || || || || ||||||||||||||| Sbjct 34889 CTCAAGGGTAATAGTTTTCCCAGTAAGCGTCTTAACAAAAATTTGCATT 34937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380953539471870