Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3095 205 1e-47 seq6003 111 2e-19 seq1847 111 2e-19 seq1602 93.3 6e-14 >seq3095 Length=123113 Score = 205 bits (226), Expect = 1e-47 Identities = 596/910 (65%), Gaps = 16/910 (2%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAA--TGATATAT 41831 || ||||||||||| || | || || || ||||| || || || | || |||| || Sbjct 111876 TTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCCCCTGTAAACTGATCAAT 111817 Query 41832 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 41891 | |||| ||||||| || || |||||| || | ||| | |||| | | || | Sbjct 111816 T--CCATCCAATCAAATGGGTTTTGAACATTGTATAATTTGCTGTATCCAAGTGCATTCA 111759 Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 || |||||| || | ||||| || ||| |||||| |||| ||||||||| | | Sbjct 111758 GCAGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATCACCATTCATTCCGACCA 111699 Query 41952 GTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 42009 | | |||||||| | ||| | |||||| || ||| |||||||| | | Sbjct 111698 GGGCACAAGGAAGAGCATCGCAG--ACAAATTCCCTCTCGATATCCACCGCGTCAGCAAC 111641 Query 42010 AATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 42069 || | ||| || || || || | | | | | | | || || || Sbjct 111640 AAGTCCCTTGACTCGATCCTCGCTGAGTTTCATCCTCAGAAGGCTGTAGAGCAGGCAAGC 111581 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 ||||| ||||| | ||||||||||| ||||| ||||| ||||| || | ||| || Sbjct 111580 AAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAATCCAGG 111521 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTC 42188 ||||| ||||||||||| ||||||||||| | |||| | | | || || ||||| || | Sbjct 111520 CATTAATCCACGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAAAATCC 111462 Query 42189 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCC 42245 |||| || |||||||| | | | ||| | | | | | |||| |||| Sbjct 111461 CTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGATTCTGAGCCGTCA---ATCC 111405 Query 42246 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305 | | ||||| | ||||||||| |||||||| | || || || || | || | Sbjct 111404 AGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGAAAA 111345 Query 42306 GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTG 42365 | || || || | ||| || | ||| | || | | |||||| ||||| || | Sbjct 111344 GCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACATCTCGG 111285 Query 42366 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTA 42425 |||| || || ||||| || ||||| || || || ||| | ||||| | | || | Sbjct 111284 AATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGATTTGAA 111225 Query 42426 CTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAA 42485 | ||| | || | |||||| ||| || || || ||||| ||| ||||||| Sbjct 111224 CCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGGCAAAAA 111165 Query 42486 ACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGA 42545 | || | ||||| || || |||| || || ||| || ||||||| ||| | | | Sbjct 111164 AGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTGCTGTA 111105 Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605 ||| | || | ||| || ||||| |||||||||| || || |||||||| || |||| Sbjct 111104 CATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTTGTACA 111045 Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAA 42665 | | ||| || | |||||||||||||||| || || | || || |||||| | | Sbjct 111044 TTTCCCAAATTTGGGGATATTGAATTGGGAACATGCAGAACCGATCTGTATTTGGGGTGA 110985 Query 42666 GGATCGGTTC 42675 |||| ||||| Sbjct 110984 GGATGGGTTC 110975 >seq6003 Length=93342 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||||||||| | |||| ||| |||| ||| | |||| || |||||||| ||| ||| Sbjct 80735 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 80794 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 |||||||| ||||| || || || || |||||| | ||||| || || || || Sbjct 80795 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 80854 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| |||||||| || ||| ||| | || || ||| | |||||||| ||| Sbjct 80855 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 80914 Query 72358 CCCTCTATACTATCATCCATCATG 72381 ||||| || ||||| || ||||| Sbjct 80915 CCCTCAATGCTATCTTCTTTCATG 80938 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| |||||||| | |||||||| || || ||||||||| | ||||| ||||| Sbjct 81095 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGTGTAAACCATCGCTGAGACAATAGATGA 81154 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || | ||||||| |||||||| | ||| || || || || | || | ||| || Sbjct 81155 TATGTTTTGATAGCTGCATCTATATCATCCTTG-TGGATCCCAACAGAAACCCTCATCAA 81213 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| || ||||| |||||||| | ||| | || || || | || ||| | || | Sbjct 81214 CATGTGTTGAGGCCTTTCAACAACCTTCCCTCTGATCTTTAAGAGATACGATCTCTCAAG 81273 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||||||||||||| | | || |||||||| || || || || Sbjct 81274 AGTTTTAAAACCAAAGAAATCATAATCAAAGTCTCTGTCATATATGAT 81321 >seq1847 Length=115635 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||||||||| | |||| ||| |||| ||| | |||| || |||||||| ||| ||| Sbjct 24547 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 24606 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 |||||||| ||||| || || || || |||||| | ||||| || || || || Sbjct 24607 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 24666 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| |||||||| || ||| ||| | || || ||| | |||||||| ||| Sbjct 24667 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 24726 Query 72358 CCCTCTATACTATCATCCATCATG 72381 ||||| || ||||| || ||||| Sbjct 24727 CCCTCGATGCTATCTTCTTTCATG 24750 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 71923 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACAT 71982 || |||||||| || || || ||||| || |||||| || | ||||||||| Sbjct 24081 TCATATTGTGTGTACAAAGTCTCAAACTCTTCACCCCAACAATCAGCCAATCCAGGAGCC 24140 Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 ||||| ||||| | ||||||||| | |||| | | |||| | |||||| | |||| Sbjct 24141 TCATTTGGACAAAACAATGACCATTGCCCATTAGATTGGACTCTCTGCATAAATAAATCA 24200 Query 72043 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 || | ||||||||| |||||||||||||| | ||||| || Sbjct 24201 GGCACCCAAAGAGCATAAAATAGATCTCTGGCACGGTGCTCTTC 24244 >seq1602 Length=196056 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || |||||||| | |||| ||| || | ||| | ||||||| |||||||| ||||||| Sbjct 115645 CCCCCCTGATCCACATATCGAGCTGTATCATTGAACACTCTCAGCATTGGAACAATACCA 115704 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||| | ||||| || || ||||| |||||| | ||||| || || | || Sbjct 115705 TTGGAGGTCCCATTTGTTCCACGAATATAACTTCCAGTTGCACGGATGTTATGCACAGAG 115764 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| || || ||| ||| | || || || | |||||||| ||| Sbjct 115765 ACACCAATTCCTCCGGCTGATTTGCTGATGACAGCACACTCCTTCAGTGTATCATATATG 115824 Query 72358 CCCTCTATACTATCATCCATCATG 72381 ||||| || ||||| || ||||| Sbjct 115825 CCCTCAATGCTATCCTCTTTCATG 115848 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| |||||||| | |||||||| || || ||||||||| | ||| | |||| | Sbjct 116011 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGAGTAAACCATCGCTGAGATAAGAGATGG 116070 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || | |||| | || || ||||| | ||| || || || | || | ||| ||| Sbjct 116071 TATGTTTTAATAACAGAATCGATATCATCCTTATGGATCCCAACAGAAACCCTCATCAAC 116130 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || || ||||| || || || | ||| | || || || || || || | || | Sbjct 116131 ATGTGTTGAGGCCTCTCCACAACCTTCCCTTGGATCTTTAAGAAATAAGACCTCTCAAGG 116190 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||||||||||| || | || |||||||| || || || || Sbjct 116191 GTTTTAAAACCAAAGTAATCATACTCAAAGTCTCTGTCATATATGAT 116237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670388237181400