Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq979 93.3 4e-14 seq10374 89.7 5e-13 seq2537 89.7 5e-13 seq3534 87.8 2e-12 seq4136 86.0 6e-12 >seq979 Length=283929 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| || || || || || ||||||||||| || || | || ||| Sbjct 158090 ACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTACGGCCATCCTCG 158031 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 ||||||||||||||| | ||||| | ||| || || ||||| || ||||| || || Sbjct 158030 AGTTGTTTACCAGCAAAAATCAGCCTTTGTTGGTCTGGAGGAATCCCTTCCTTATCTTGG 157971 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| |||| | || | || || | | ||| || || | ||| | |||||| Sbjct 157970 ATTTTAGCCTTTACGTTGTCAATGGTATCGGAGCTTTCCACCTCGAGAGTGATGGTCTTG 157911 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| ||||| ||||| || ||||| Sbjct 157910 CCAGTCAAGGTTTTCACGAAAATCTGCAT 157882 Score = 82.4 bits (90), Expect = 8e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| ||||| ||||| || |||||||| || || || || ||| || | || Sbjct 158997 ATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCCGCCAGGGTCCTTCCGTCCTCCAACTG 158938 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 || || ||| |||||| || ||||| || || || || ||||||||||| ||| || Sbjct 158937 CTTCCCGGCAAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGAATCTT 158878 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | || | || |||| | ||| || || | ||| | ||||| || || Sbjct 158877 GGCCTTCACGTTGTCAATAGTATCCGAGCTTTCAACCTCCAAAGTGATGGTCTTCCCAGT 158818 Query 143161 CAATGTTTTTACGAATATTTGCATAGCT 143188 ||| || || || |||||||||||| || Sbjct 158817 CAAAGTCTTGACAAATATTTGCATACCT 158790 >seq10374 Length=62593 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| || || || || || ||||||||||| || || | || || Sbjct 57842 ACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTACGGCCATCCTCA 57783 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 ||||||||||||||| | || || | |||||| || ||||| || ||||| ||||| Sbjct 57782 AGTTGTTTACCAGCAAAAATAAGTCTTTGCTGGTCTGGAGGGATCCCTTCCTTGTCTTGG 57723 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || |||| | || | || || | | ||| ||||| | || | |||||| Sbjct 57722 ATCTTGGCCTTTACGTTGTCAATGGTATCAGAGCTTTCCACTTCGAGGGTGATAGTCTTG 57663 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| ||||| ||||| || ||||| Sbjct 57662 CCAGTCAAGGTTTTCACGAAAATCTGCAT 57634 >seq2537 Length=190147 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGT 143030 |||||| | ||||| ||| ||||| ||||| || |||||||| ||| | || | | Sbjct 144360 CAAAACAAGATGAAGTGTTGATTCCTTTTGGATATTGTAATCTGCTAAG-GTCCGGCCAT 144302 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| | ||||||||||||| | || || | |||||||| |||||||| |||||||||| Sbjct 144301 CTTCCAATTGTTTACCAGCAAATATAAGCCTCTGCTGATCAGGAGGTATACCTTCTTTGT 144242 Query 143091 C 143091 | Sbjct 144241 C 144241 >seq3534 Length=113076 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||| | |||| ||| ||||| ||||| || |||||||| | Sbjct 92779 CCTCCTCTAAGCCTCAAAACGAGGTGAAGTGTTGATTCCTTTTGGATATTGTAATCTGCC 92720 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | ||||||||||||| | || || | ||||| || ||||| Sbjct 92719 AAGGTCCGTCCA-TCTTCCAATTGTTTACCAGCAAATATAAGCCTCTGCTGGTCAGGAGG 92661 Query 143077 TATGCCTTCTTTGTC 143091 ||| ||||||||||| Sbjct 92660 TATACCTTCTTTGTC 92646 >seq4136 Length=93312 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || || || | || || || ||||| |||||||| || Sbjct 35622 CCTCCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGCA 35681 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||| || || |||||||||||| |||| || | ||||| || ||||| Sbjct 35682 AGGGTACGCCCGTCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGAGGG 35741 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || || || |||| | || | ||||| | | ||| || Sbjct 35742 ATCCCTTCTTTATCTTGGATCTTAGCCTTTACATTATCGATGGTGTCGGAGCTTTCCACC 35801 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||||||||| | ||||| ||||| || ||||| Sbjct 35802 TCAAGGGTGATGGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCAT 35848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506447082574800