Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20]
89,515 sequences; 867,455,155 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq341 168 1e-36
seq3095 140 5e-28
>seq341
Length=228855
Score = 168 bits (186), Expect = 1e-36
Identities = 391/580 (67%), Gaps = 12/580 (2%)
Strand=Plus/Minus
Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055
||||||| || ||||| | ||||||||||||||||| || || ||||||| ||||
Sbjct 3345 TGTTTCCAATTCAGTATCCCAAAATTTGGGAAATGTACAAGAAAGCAGAGGCCTCGTTTT 3286
Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115
|||||| |||||||||||| ||||| |||| | | | ||||| | | ||||||
Sbjct 3285 GGACGGCGGAAGAGGTCGATTTGTCCCAGGATATACAGCACTGGGAAAAAC---TGACTG 3229
Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175
| ||| | || || ||||||| | ||||| || |||| ||| || || ||||
Sbjct 3228 AGGACGAGAAGCATTTCATTAAGCACATTCTTGCCTTTTTCGCCGCCTCAGACGGCATCG 3169
Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234
| || || || | || | | ||| | ||| | || | |||| ||||||
Sbjct 3168 TTTTGGAGAACCTCGCTG-GAAGGTTCATGAAGGAGGTTCAAATCTCGGAGG-CTCGTGC 3111
Query 125235 -TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293
||||| || ||||||||| ||||||||| | || || || |||||| | || |
Sbjct 3110 GTTTTATGGGTTCCAAATCGCGATTGAGAATATCCATTCTGAGATGTACAGTCTTCTTCT 3051
Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353
||| || || ||| || | || | | ||| || |||||||||| || ||
Sbjct 3050 TGAATCTTATATCAAGGATTCGGAGGAGAAGAATAGGCTTTTCCACGCAATCGAGACCGT 2991
Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413
|| | | | || ||||| | |||| | || |||||||||| | || ||
Sbjct 2990 TCCTTGTGTGGAGAAGAAGGCCAAGTGGGCCCTCCGCTGGATCGATGGCTCAGAG---TC 2934
Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TT 125472
| || || | | | || ||||| ||| || || || ||||| ||||| || ||
Sbjct 2933 CTTTGCTGAGCGTATACTCGCCTTCGCTTGCGTTGAAGGGATTTTCTTCTCGGGAAGCTT 2874
Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532
||| || || |||||||| |||||||| ||| | ||||| ||| | || | ||||
Sbjct 2873 CTGC-GCAATATTTTGGCTAAAGAAGCGAGGATTAATGCCTGGATTAACTTTCTCGAACG 2815
Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572
|||| || |||||||| |||||| |||||||||| |||||
Sbjct 2814 AGTTGATCTCTCGAGATGAGGGCTTACACTGTGATTTTGC 2775
>seq3095
Length=123113
Score = 140 bits (154), Expect = 5e-28
Identities = 373/559 (67%), Gaps = 16/559 (3%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
||||||||||||||||| ||||| ||||||| |||||||||| |||||||| ||| ||
Sbjct 111035 ATTTGGGAAATGTACAAGAAGGCAGAGGCCTCGTTTTGGACGGCGGAAGAGGTTGATTTG 111094
Query 125079 TCCAAGGACCTGTAC--GATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATAT 125136
||| |||| ||||| | ||||| | ||||| || |||| | || ||
Sbjct 111095 TCCCAGGA--TGTACAGCACTGGGA---TAAATTGACCGAGGATGAGAAGCATTTCATTA 111149
Query 125137 CGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACA 125195
||| || | ||||| ||||||| |||||| || || || || ||||| | || |
Sbjct 111150 AGCATGTTCTTGCCTTTTTTGCCGCCTCCGACGGCATTGTTTTGGAGAATCTAGCTGGGA 111209
Query 125196 CGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCAT 125254
| ||| ||||| | || | |||| | ||||| ||||| || ||||| |||
Sbjct 111210 -GGTTCATGAAAGAGGTTCAAATCTCGGAGGCG-CGTGCTTTTTATGGGTTCCAGATCGC 111267
Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314
||||||||| | || || || |||||| | || |||| || || ||| |
Sbjct 111268 GATTGAGAATATCCATTCCGAGATGTACAGTCTTCTTCTTGAGTCCTATATAAAGGATTC 111327
Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374
| | || | ||| || |||||||||| || || || | | | | || |||||
Sbjct 111328 GGAGGAGAAGAATCGGCTTTTCCACGCAATCGAGACCGTTCCTTGTGTTGGGAAGAAGGC 111387
Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434
| |||| | || ||||| ||||| | || | ||| || | | | ||
Sbjct 111388 CAAGTGGGCCCTCCGCTGGAT---TGACGGCTCAGAATCCTTCGCTGAGCGCATACTCGC 111444
Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTCA 125493
|| || ||| || || || ||||| ||||| || || ||| || || |||||||| |
Sbjct 111445 CTTTGCTTGCGTCGAAGGGATTTTCTTCTCGGGAAGCTTCTGC-GCGATATTTTGGCTAA 111503
Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553
| ||||| ||| | ||||| ||| | || |||||||| || || ||||| ||||
Sbjct 111504 AAAAGCGTGGATTAATGCCTGGATTAACTTTTTCAAACGAGTTAATCTCGCGAGATGAGG 111563
Query 125554 GCCTACACTGTGACTTTGC 125572
| |||||||||| |||||
Sbjct 111564 GTTTACACTGTGATTTTGC 111582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740230001071400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |