Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq341 168 1e-36 seq3095 140 5e-28 >seq341 Length=228855 Score = 168 bits (186), Expect = 1e-36 Identities = 391/580 (67%), Gaps = 12/580 (2%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| || ||||| | ||||||||||||||||| || || ||||||| |||| Sbjct 3345 TGTTTCCAATTCAGTATCCCAAAATTTGGGAAATGTACAAGAAAGCAGAGGCCTCGTTTT 3286 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| |||||||||||| ||||| |||| | | | ||||| | | |||||| Sbjct 3285 GGACGGCGGAAGAGGTCGATTTGTCCCAGGATATACAGCACTGGGAAAAAC---TGACTG 3229 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| | || || ||||||| | ||||| || |||| ||| || || |||| Sbjct 3228 AGGACGAGAAGCATTTCATTAAGCACATTCTTGCCTTTTTCGCCGCCTCAGACGGCATCG 3169 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 | || || || | || | | ||| | ||| | || | |||| |||||| Sbjct 3168 TTTTGGAGAACCTCGCTG-GAAGGTTCATGAAGGAGGTTCAAATCTCGGAGG-CTCGTGC 3111 Query 125235 -TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||||| || ||||||||| ||||||||| | || || || |||||| | || | Sbjct 3110 GTTTTATGGGTTCCAAATCGCGATTGAGAATATCCATTCTGAGATGTACAGTCTTCTTCT 3051 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353 ||| || || ||| || | || | | ||| || |||||||||| || || Sbjct 3050 TGAATCTTATATCAAGGATTCGGAGGAGAAGAATAGGCTTTTCCACGCAATCGAGACCGT 2991 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 || | | | || ||||| | |||| | || |||||||||| | || || Sbjct 2990 TCCTTGTGTGGAGAAGAAGGCCAAGTGGGCCCTCCGCTGGATCGATGGCTCAGAG---TC 2934 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TT 125472 | || || | | | || ||||| ||| || || || ||||| ||||| || || Sbjct 2933 CTTTGCTGAGCGTATACTCGCCTTCGCTTGCGTTGAAGGGATTTTCTTCTCGGGAAGCTT 2874 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 ||| || || |||||||| |||||||| ||| | ||||| ||| | || | |||| Sbjct 2873 CTGC-GCAATATTTTGGCTAAAGAAGCGAGGATTAATGCCTGGATTAACTTTCTCGAACG 2815 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||| || |||||||| |||||| |||||||||| ||||| Sbjct 2814 AGTTGATCTCTCGAGATGAGGGCTTACACTGTGATTTTGC 2775 >seq3095 Length=123113 Score = 140 bits (154), Expect = 5e-28 Identities = 373/559 (67%), Gaps = 16/559 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 ||||||||||||||||| ||||| ||||||| |||||||||| |||||||| ||| || Sbjct 111035 ATTTGGGAAATGTACAAGAAGGCAGAGGCCTCGTTTTGGACGGCGGAAGAGGTTGATTTG 111094 Query 125079 TCCAAGGACCTGTAC--GATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATAT 125136 ||| |||| ||||| | ||||| | ||||| || |||| | || || Sbjct 111095 TCCCAGGA--TGTACAGCACTGGGA---TAAATTGACCGAGGATGAGAAGCATTTCATTA 111149 Query 125137 CGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACA 125195 ||| || | ||||| ||||||| |||||| || || || || ||||| | || | Sbjct 111150 AGCATGTTCTTGCCTTTTTTGCCGCCTCCGACGGCATTGTTTTGGAGAATCTAGCTGGGA 111209 Query 125196 CGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCAT 125254 | ||| ||||| | || | |||| | ||||| ||||| || ||||| ||| Sbjct 111210 -GGTTCATGAAAGAGGTTCAAATCTCGGAGGCG-CGTGCTTTTTATGGGTTCCAGATCGC 111267 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||||||||| | || || || |||||| | || |||| || || ||| | Sbjct 111268 GATTGAGAATATCCATTCCGAGATGTACAGTCTTCTTCTTGAGTCCTATATAAAGGATTC 111327 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 | | || | ||| || |||||||||| || || || | | | | || ||||| Sbjct 111328 GGAGGAGAAGAATCGGCTTTTCCACGCAATCGAGACCGTTCCTTGTGTTGGGAAGAAGGC 111387 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | || ||||| ||||| | || | ||| || | | | || Sbjct 111388 CAAGTGGGCCCTCCGCTGGAT---TGACGGCTCAGAATCCTTCGCTGAGCGCATACTCGC 111444 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTCA 125493 || || ||| || || || ||||| ||||| || || ||| || || |||||||| | Sbjct 111445 CTTTGCTTGCGTCGAAGGGATTTTCTTCTCGGGAAGCTTCTGC-GCGATATTTTGGCTAA 111503 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 | ||||| ||| | ||||| ||| | || |||||||| || || ||||| |||| Sbjct 111504 AAAAGCGTGGATTAATGCCTGGATTAACTTTTTCAAACGAGTTAATCTCGCGAGATGAGG 111563 Query 125554 GCCTACACTGTGACTTTGC 125572 | |||||||||| ||||| Sbjct 111564 GTTTACACTGTGATTTTGC 111582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740230001071400