Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004686.1 Length=56276 Score E Sequences producing significant alignments: (Bits) Value seq29129 82.4 3e-11 >seq29129 Length=645 Score = 82.4 bits (90), Expect = 3e-11 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 40008 TGCTCCCAGGTCGATCCCGAGCTGTTCTTCCCCGAAAAGGGAGGAAACGCGAAACCCG-- 40065 ||| ||||| ||| ||||| ||||||||||| ||||| || | ||| | || Sbjct 448 TGCGCCCAGACCGACCCCGAAGCATTCTTCCCCGAGAAGGGCGG---CTCGACCCGCGAG 504 Query 40066 -CAAAGCGGATCTGCGGTATGTGCGACGTCCGGGACGAATGCCTTCAGTGGGCGCTGGAC 40124 | ||||| ||||| | |||||||||||| | ||| ||||| | | || || | | Sbjct 505 GCCAAGCGCGTCTGCCTGACGTGCGACGTCCGCGGCGAGTGCCTCGACTACGCCCTCGCC 564 Query 40125 AACAACGAACAGTTCGGCATCTTCGGCGGCCTGTCCGAGCGTGAACGCCG 40174 || |||||| |||||||||| ||||| || || ||||| || ||||| Sbjct 565 CACGACGAACGCTTCGGCATCTGGGGCGGGCTTTCGGAGCGAGAGCGCCG 614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179770302506340