Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1123 111 1e-19 seq7954 102 7e-17 seq646 102 7e-17 seq4136 98.7 8e-16 seq3688 98.7 8e-16 seq203 93.3 3e-14 seq43 91.5 1e-13 seq10884 89.7 4e-13 seq10374 84.2 2e-11 >seq1123 Length=183110 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| || | ||||| ||||| ||| | || |||||| || ||||||||||||| Sbjct 68113 TTCCTCCACGGAGCCTTAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATATTGTAATCCG 68054 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | |||| || | || || |||||||| || ||| |||| | ||||||||| ||| | Sbjct 68053 CAAGTGTTCTGCCATCTTCTAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCCGGAG 67994 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||||||||| ||||| || || | | | | ||| || | ||| Sbjct 67993 GAATGCCCTCTTTGTCCTGGATTTTTGCCTTGACGTTGTCAATAGTGTCAGAACTTTCCA 67934 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || ||||| | || || |||||||||||||| Sbjct 67933 CCTCAAGTGTTATAGTCTTCCCTGTAAGGGTCTTCACAAAAATTTGCAT 67885 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| ||| ||||||| || | || ||||| || ||||| |||||||| || Sbjct 68339 CCACCACGCAGCCTCAACACCAAATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGCT 68280 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| || || || ||||||| ||||||||||| ||| Sbjct 68279 AGGGTCCGGCCATCCTCAAGCTGCTTCCCAGCGAAAATAAGCCTCTGCTGATCAGGGGGA 68220 Query 18935 ACGCCCTCTTTGTC 18948 | |||||||||||| Sbjct 68219 ATGCCCTCTTTGTC 68206 >seq7954 Length=38498 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || ||||||||||| ||||||||||| |||| ||| | | || || Sbjct 10376 ACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAATCGGCCAGTGTCCTTCCATCTTCA 10435 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || ||||| || ||| |||| ||||| || || ||| || | |||||| ||||| | Sbjct 10436 AGTTGTTTTCCAGCAAAAATGAGTCTTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGA 10495 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | || ||| | |||| || | ||||||||||| Sbjct 10496 ATCTTAGCCTTCACATTATCAATTGTGTCGGAACTCTCCACCTCCAAAGTAATGGTTTTT 10555 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||||||||||||||| Sbjct 10556 CCCGTCAGGGTCTTGACAAAAATTTGCAT 10584 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || || |||||||| ||||||||||| |||| |||| | || || Sbjct 10148 ACCAAGTGCAATGTGGATTCCTTTTGGATATTGTAATCAGCCAGTGTTCGTCCATCTTCG 10207 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| |||| || ||||| || || || | |||||| ||||| | Sbjct 10208 AGCTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGA 10267 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || ||| || | | | | || ||| | |||| || | || |||||||| Sbjct 10268 ATCTTTGCTTTCACATTGTCAATTGTGTCGGAACTCTCCACCTCCAAAGTGATGGTTTTT 10327 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || || || |||||||| Sbjct 10328 CCGGTCAGGGTCTTCACGAAGATTTGCAT 10356 >seq646 Length=154290 Score = 102 bits (112), Expect = 7e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | |||||| | ||||| ||||| || |||||||| ||||| || || || ||| Sbjct 48578 CCTCCCCTCAACCTCAGCACCAAGTGCAGAGTTGACTCCTTCTGAATGTTATAGTCTGCC 48637 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| | ||||||| ||||| ||||| || | || || || ||||| || || Sbjct 48638 AATGTTCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGG 48697 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT- 18993 | ||||| ||||| ||||| ||| || | | | ||| ||| || || Sbjct 48698 ATTCCCTCCTTGTCCTGGATTTTAGCTTTGACATTATCAATAGTGTCGGAGCTCTTCGAC 48757 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||| || || || || | |||||||||||||| ||||| Sbjct 48758 TTCAAGGGTAATTGTCTTCCCAGTGAGGGTTTTGACAAAAATCTGCAT 48805 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| ||||||| ||| | || |||||||| ||||| |||||||| ||| Sbjct 48807 CCACCACGAAGCCTCAACACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCC 48866 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||||||||| || | ||||| ||||| || ||| || Sbjct 48867 AAAGTACGGCCATCCTCAAGCTGTTTACCAGCGAAGATAAGCCTCTGTTGGTCCGGTGGG 48926 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || ||||| || || ||| || | | | || ||| |||| Sbjct 48927 ATGCCTTCCTTGTCTTGTATCTTGGCTTTAACATTATCAATGGTGTCGGAGCTCTCCACC 48986 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||||| || || | || ||||| ||||| ||||| Sbjct 48987 TCCAAAGTAATGGTTTTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 49033 >seq4136 Length=93312 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | |||||| | |||| ||||| || |||||||| ||||| || || || ||| Sbjct 34482 CCTCCCCTCAACCTCAGGACCAAGTGCAGAGTTGACTCCTTCTGAATGTTATAGTCTGCC 34541 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| | ||||||| ||||| ||||| || | || || |||||||| || || Sbjct 34542 AATGTTCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 34601 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||||| || || | | | ||||||| ||| | Sbjct 34602 ATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTTATCAATAGTATCGGAGCTCTCAACT 34661 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| || || || || | || ||||||||||| ||||| Sbjct 34662 TCAAGGGTAATTGTCTTCCCAGTAAGGGTCTTGACAAAAATCTGCAT 34708 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| ||||||| ||| | || ||||||||||||||||| || || ||| Sbjct 34710 CCACCACGAAGCCTCAACACCAAGTGGAGAGTGGACTCCTTTTGAATATTATAGTCAGCC 34769 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||||||||| || | ||||| ||||| || || || Sbjct 34770 AAAGTACGGCCATCCTCAAGCTGTTTACCAGCGAAGATAAGCCTCTGTTGGTCTGGTGGG 34829 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| ||||| || || | | | || ||| || Sbjct 34830 ATGCCCTCCTTGTCTTGGATTTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCAACC 34889 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | |||||| ||||| || || | || || ||||||||||||||| Sbjct 34890 TCAAGGGTAATAGTTTTCCCAGTAAGCGTCTTAACAAAAATTTGCATT 34937 >seq3688 Length=93992 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| ||||||||||||||||| ||||| || || | ||| | ||||||||| ||| Sbjct 93757 GTGCAGAGTAGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCCAACTG 93698 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||| || || ||||||| | |||||| ||| || | |||||| ||||| || || Sbjct 93697 TTTTCCTGCGAAAATAAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTGGATCTT 93638 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | ||| || ||| | ||| |||| ||||| || ||||| || Sbjct 93637 GGCCTTGACATTATCGATTGTGTCGGAACTCTCAACCTCGAGAGTAATCGTCTTACCGGT 93578 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| ||||| || ||||| Sbjct 93577 TAGGGTTTTCACAAAGATCTGCAT 93554 >seq203 Length=254899 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | |||||||||||||| || ||||| ||||||| || | | |||||| Sbjct 80201 ACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCGGCCATCCTCC 80260 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||||||||| ||| | || | | || |||||| || | || || || || | Sbjct 80261 AGCTGTTTACCAGCAAAGATCAAACGTTGTTGATCCGGAGGGATCCCTTCCTTATCTTGA 80320 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || ||| || | | | | || || | ||| ||| | ||| || ||||| Sbjct 80321 ATCTTAGCTTTAACATTGTCAATTGTGTCAGAACTCTCAACTTCCAAGGTTATTGTTTTT 80380 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || ||||||||||||||||| Sbjct 80381 CCTGTCAAGGTCTTGACAAAAATTTGCAT 80409 >seq43 Length=356683 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 || ||||||| ||| || || |||||||||||||||||||| || |||| || | Sbjct 119863 CTCAACACCAAGTGAAAGGTTGACTCCTTTTGAATATTGTAGTCTGCCAAAGTACGACCA 119922 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 ||||| ||||||||||| || | || || |||||||| || || | |||||||| Sbjct 119923 TCCTCGAGCTGTTTACCAACAAAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTA 119982 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || |||||| || || | | | | ||||| ||| |||| ||| || Sbjct 119983 TCCTGAATTTTTGCCTTGACATTGTCAATGGTATCTGAGCTCTCAACCTCGAGGGTGATT 120042 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| | || || |||||||| ||||| Sbjct 120043 GTCTTCCCTGTGAGGGTCTTAACAAAAATCTGCAT 120077 >seq10884 Length=505 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 || ||||||| ||| | ||||||||||||||||||||||| || |||| || | | Sbjct 50 CTCAACACCAAGTGAAGGGTAGACTCCTTTTGAATATTGTAGTCTGCCAAAGTACGGCCA 109 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 ||||| ||||| ||||| || | || || |||||||| || || | ||||| || Sbjct 110 TCCTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTA 169 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTC-CG-TTTCGACGGTAA 19004 || |||||| ||| || | | | | |||| | | |||| || || | ||| | Sbjct 170 TCCTGAATTTTTGCTTTGACATTGTCAATGGTAT--CTAAGCTCTCGACCTCAAGGGTGA 227 Query 19005 TGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || || || || | || ||||||||||| ||||| Sbjct 228 TTGTCTTCCCCGTGAGGGTCTTGACAAAAATCTGCAT 264 >seq10374 Length=62593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | |||||| | ||||| ||||| |||||||| || || || ||||| |||||| Sbjct 59000 CCTCCCCTCAACCTAAGCACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCCGCC 58941 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| || || ||| | ||||| ||||| || || || Sbjct 58940 AAGGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGA 58881 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | ||||| || || ||||| || || | | | | || || | || |||| Sbjct 58880 ATACCCTCCTTATCCTGGATTTTTGCCTTGACATTGTCAATGGTGTC-CGAGCTCTCCAC 58822 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || || || || || || || || |||||||||||||| Sbjct 58821 CTCCAAGGTGATCGTCTTGCCGGTCAAGGTCTTCACAAAAATTTGCAT 58774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414120515973910