Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq203 91.5 1e-13 seq10884 89.7 4e-13 seq4136 89.7 4e-13 seq43 89.7 4e-13 seq1123 87.8 1e-12 >seq203 Length=254899 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||| || ||||| | || || || ||| || || || |||||||| Sbjct 79955 CCACCTCTCAGCCTCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTATAATCCGC- 80013 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || ||| || | |||||| ||||||||||| | || ||| |||||| |||| Sbjct 80014 AAGGGTCCTTCCATCTTCAAGTTGTTTGCCTGCAAATATAAGCCTTTGTTGGTCCGGAGG 80073 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| |||||| |||||| || || || ||| || || | ||| || Sbjct 80074 GATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTATCAATTGTGTCCGAACTCTCAAC 80133 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||| || || || ||||| ||||| ||||||||| Sbjct 80134 TTCCAAGGTTATAGTTTTTCCTGTCAAGGTCTTGACAAAGATTTGCATG 80182 >seq10884 Length=505 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 ||| |||||||| || || ||| ||| ||||||||||| || || || ||| | Sbjct 277 TCTCAACACCAAGTGAAGGGTGAACTCCTTTTGAATATTGTAGTCTGCCAAAGTACGGCC 336 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| || | ||| || || ||||| |||| || |||||||| | || | || || || Sbjct 337 ATCCTCGAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATACTCTCCTT 396 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 ||| |||||| ||||| | ||| ||||||| ||| || |||| || || Sbjct 397 ATCCTGGATTTTTGCCTTGACATTGCCAATGGTATCTGAGCTCTCGACCTCGAGGGTGAT 456 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||| || || || | ||||| ||||| || |||||| Sbjct 457 TGTCTTCCCCGTGAGGGTCTTGACAAAAATCTGCATG 493 >seq4136 Length=93312 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||| || ||||| ||||| ||||||| |||||||||| |||| | ||| || | Sbjct 34324 CATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCCGGAGGAATACCCTCCT 34383 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || |||||| | | | ||||| | ||||| || | || | Sbjct 34384 TATCCTGAATCTTGGCTTTGACGTTGTCGATTGTATCAGAGCTTTCCACCTCCAAAGTGA 34443 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || || | ||||||||||||||| ||||| Sbjct 34444 TGGTTTTTCCAGTAAGAGTCTTCACAAATATCTGCAT 34480 >seq43 Length=356683 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 ||| |||||||| || | || ||| ||||||||||| || || || ||| | Sbjct 119862 TCTCAACACCAAGTGAAAGGTTGACTCCTTTTGAATATTGTAGTCTGCCAAAGTACGACC 119921 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| || | ||||| || |||| |||| || |||||||| | || | ||| ||||| Sbjct 119922 ATCCTCGAGCTGTTTACCAACAAAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCTTT 119981 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 ||| ||||||| ||||| | ||| ||||||| ||| || |||| || || Sbjct 119982 ATCCTGAATTTTTGCCTTGACATTGTCAATGGTATCTGAGCTCTCAACCTCGAGGGTGAT 120041 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||| || || || | ||||| ||||| || |||||| Sbjct 120042 TGTCTTCCCTGTGAGGGTCTTAACAAAAATCTGCATG 120078 >seq1123 Length=183110 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 |||| |||||| || || |||||||| || || ||||| ||||| | | | || Sbjct 68099 CTTAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATATTGTAATCCGCAAGTGTTCTGCCA 68040 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | ||||| || ||||| ||||| | ||||||||| |||| | || ||||| Sbjct 68039 TCTTCTAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCCGGAGGAATGCCCTCTTTG 67980 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || |||||| ||||| | ||| ||| || | ||||| || | || || Sbjct 67979 TCCTGGATTTTTGCCTTGACGTTGTCAATAGTGTCAGAACTTTCCACCTCAAGTGTTATA 67920 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || || | ||||||||||| ||||||||| Sbjct 67919 GTCTTCCCTGTAAGGGTCTTCACAAAAATTTGCATG 67884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354390550388220