Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq7954 93.3 4e-14 seq3534 89.7 4e-13 seq2537 89.7 4e-13 seq10374 84.2 2e-11 seq1123 82.4 6e-11 >seq7954 Length=38498 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || | ||| ||||| ||||| || |||||||| ||| ||| |||||| Sbjct 10148 ACCAAGTGCAATGTGGATTCCTTTTGGATATTGTAATCAGCCAGTGTTCGTCCATCTTCG 10207 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||| || ||| |||| ||||||||||| || || | ||| || ||||| | Sbjct 10208 AGCTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGA 10267 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||| |||||| | | ||| | ||| | ||| |||| || |||||||| Sbjct 10268 ATCTTTGCTTTCACATTGTCAATTGTGTCGGAACTCTCCACCTCCAAAGTGATGGTTTTT 10327 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||| || || || || |||||||| Sbjct 10328 CCGGTCAGGGTCTTCACGAAGATTTGCAT 10356 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || || || ||||| || ||||||||| ||| || | |||||| Sbjct 10376 ACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAATCGGCCAGTGTCCTTCCATCTTCA 10435 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| |||| || || ||||| || || | ||| || ||||| | Sbjct 10436 AGTTGTTTTCCAGCAAAAATGAGTCTTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGA 10495 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || ||||| | ||| | ||| | ||| |||| ||||||||||| Sbjct 10496 ATCTTAGCCTTCACATTATCAATTGTGTCGGAACTCTCCACCTCCAAAGTAATGGTTTTT 10555 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || |||| || ||||||||||||||||| Sbjct 10556 CCCGTCAGGGTCTTGACAAAAATTTGCAT 10584 >seq3534 Length=113076 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||||| | |||||| || | || ||||| ||||| ||||| || Sbjct 92791 TTGATCATAGTTCCTCCTCTAAGCCTCAAAACGAGGTGAAGTGTTGATTCCTTTTGGATA 92732 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| || ||||||||||||||| || ||| | ||||||||||| Sbjct 92731 TTGTAATCTGCCAAGGTCCGTCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTCTGC 92672 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||||||||| Sbjct 92671 TGGTCAGGAGGTATACCTTCTTTGTC 92646 >seq2537 Length=190147 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||| | | |||||| || | ||| ||||| ||||| ||||| || Sbjct 144386 TTGATCATAGTTCCTCCCCTGAGCCTCAAAACAAGATGAAGTGTTGATTCCTTTTGGATA 144327 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| | | || ||||||||||||||| || ||| | ||||||||||| Sbjct 144326 TTGTAATCTGCTAAGGTCCGGCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTCTGC 144267 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | ||||||||||| Sbjct 144266 TGATCAGGAGGTATACCTTCTTTGTC 144241 >seq10374 Length=62593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| | ||||| | |||||| || || ||||| ||||| || |||||||| || || Sbjct 59000 CCTCCCCTCAACCTAAGCACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCCGCC 58941 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || ||| || | || || || ||| | |||||||||||||| || || Sbjct 58940 AAGGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGA 58881 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | || || || || |||||| || || | | ||| | || | || | ||| Sbjct 58880 ATACCCTCCTTATCCTGGATTTTTGCCTTGACATTGTCAATGGTGTC-CGAGCTCTCCAC 58822 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| || || ||||||||||| || || |||||||||||||| Sbjct 58821 CTCCAAGGTGATCGTCTTGCCGGTCAAGGTCTTCACAAAAATTTGCAT 58774 >seq1123 Length=183110 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | ||||||||||||||| || || || ||||| || ||||||||||| | Sbjct 68339 CCACCACGCAGCCTCAACACCAAATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGCT 68280 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || ||| || | || || || || ||||||||||||| ||||| ||| Sbjct 68279 AGGGTCCGGCCATCCTCAAGCTGCTTCCCAGCGAAAATAAGCCTCTGCTGATCAGGGGGA 68220 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||| |||||||| || || || || | ||| || ||| | |||| Sbjct 68219 ATGCCCTCTTTGTCCTGGATCTTAGCCTTGACGTTATCAATAGTATCCGAACTTTCCACC 68160 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | || || || |||||||| | || || ||||| ||||||||| Sbjct 68159 TCAAGTGTTATAGTCTTGCCGGTAAGGGTCTTCACAAATATTTGCATT 68112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419129445443715