Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq341 118 9e-22 seq3095 113 4e-20 >seq341 Length=228855 Score = 118 bits (130), Expect = 9e-22 Identities = 359/547 (66%), Gaps = 7/547 (1%) Strand=Plus/Plus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || |||||||||||||| || || ||||||| | || | |||||| || || |||| Sbjct 2772 CACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTTAAT 2831 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA-CCCGaaaaaaa 13269 || ||||| | ||||| || || | ||||||||| || ||| | | ||||| || || Sbjct 2832 CCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCCGAGAAGAA 2890 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 || |||||||| || || || | | | ||| || | | ||| | | || Sbjct 2891 AATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGG-ACTCTGAG--CCATC 2947 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 ||||| |||||| || || || | | || || | | || ||||||| Sbjct 2948 GATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGCGTG 3007 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG-CTATACA 13448 || | ||| || |||| || ||||||| || | || ||| || |||| Sbjct 3008 GAAAAGCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAG-AAGAAGACTGTACA 3066 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 | || ||||| ||||| || ||||| |||||||| |||||||| | |||||| || | Sbjct 3067 TCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCGAGA 3126 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||||| || || ||| | || | ||| || ||| || ||||| || | Sbjct 3127 TTTGAACCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGGCGG 3186 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAAT 13628 | ||||| ||||| ||||||||||| || | || |||| || | || ||| ||| | Sbjct 3187 CGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCAGT 3246 Query 13629 CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCT 13688 | | ||| | || ||||| ||||| || | |||||||| || || | || |||| Sbjct 3247 GCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTTCT 3306 Query 13689 TATACAT 13695 | ||||| Sbjct 3307 TGTACAT 3313 >seq3095 Length=123113 Score = 113 bits (124), Expect = 4e-20 Identities = 551/863 (64%), Gaps = 23/863 (3%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || || || || ||||| | ||| || || ||||| || |||||||| | Sbjct 111893 TTGACATGACTGAGGCCTTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCC 111834 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC 12962 | | ||| || |||||| |||| || || |||| ||||| | |||| ||| | Sbjct 111833 CCTGTAAACTGATCAATTCCATCCAATCAAATGGGTTTT--GAACATT-GTATAATTTGC 111777 Query 12963 ---ACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAAT 13019 | || | | | | || ||| || || ||||| || ||||| || |||| | || Sbjct 111776 TGTATCCAAGTGCATTCAGCAGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGAT 111717 Query 13020 CACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATAT 13079 ||| |||||||| | | ||| | ||| || | ||| | | || |||| Sbjct 111716 CACCATTCATTCCGACCAGGGCACAAGGAAGAGCATCGCAGACAAATTCCCTCTCGATAT 111657 Query 13080 CAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----AGA 13135 | || || || ||| | ||| ||| || || || ||| ||| || ||| Sbjct 111656 CCACCGCGTCAGCAACAA-GTCCCTTGACTCGATC-CTCGCTGAG--TTTCATCCTCAGA 111601 Query 13136 TGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCG 13195 | | | | || || |||||||||||||| || || ||||||| |||| |||| Sbjct 111600 AGGCTGTAGAGCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCG 111541 Query 13196 TTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AA 13254 |||||||| |||| || ||||| | || || ||||| | ||||||||| || ||| || Sbjct 111540 TTTGAAAAAGTTAATCCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGC-GCAGAA 111482 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 ||||| || || || ||||| || ||||| || | | | ||| || Sbjct 111481 GCTTCCCGAGAAGAAAATCCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCA----GCGA 111426 Query 13315 ACTATTTTTA-CTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCA 13373 | ||| | | | || ||||| |||||| || || || | ||| || | Sbjct 111425 AGGATTCTGAGCCGTCAATCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAA 111366 Query 13374 TATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTA 13433 | || ||||||| || | ||| || |||| || ||||| | || | Sbjct 111365 CGGTCTCGATTGCGTGGAAAAGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTC-A 111307 Query 13434 TCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492 || ||| || ||||| || ||||| ||||| || ||||| || ||||| ||||||||| Sbjct 111306 AGAAGAAGACTGTACATCTCGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAA 111247 Query 13493 CATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACT 13552 | ||||| || | ||||| || || || | |||| || || ||| Sbjct 111246 GCACGCGCCTCCGAGATTTGAACCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACA 111187 Query 13553 ATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCT 13612 || ||||| || |||||||| ||||| | |||||||| || | || || | || Sbjct 111186 ATGCCGTCGGAGGCGGCAAAAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCG 111127 Query 13613 GACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672 | ||| || ||| | | | ||| | || ||||| ||||| || | |||||||| Sbjct 111126 GTCAATTTATCCCAGTGCTGTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAAC 111067 Query 13673 GAAGCAACAGCCTTCTTATACAT 13695 || || | |||||||| ||||| Sbjct 111066 GAGGCCTCTGCCTTCTTGTACAT 111044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430512213690030