Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq953 116 2e-21 seq3085 113 2e-20 seq61706 111 8e-20 seq4896 111 8e-20 seq4040 111 8e-20 seq9379 109 3e-19 seq6656 109 3e-19 seq2947 107 1e-18 seq2586 107 1e-18 seq868 107 1e-18 seq1675 105 3e-18 seq1927 104 1e-17 seq107 104 1e-17 seq8281 102 4e-17 seq67 102 4e-17 >seq953 Length=224861 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAA-AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||| |||| ||||||||||||| | | |||||||| |||||||||||||||||||| Sbjct 106473 AATAAGAAAAGAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 106414 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 106413 CGACGCTCTAACCAACTGAGCTAATAGGCC 106384 >seq3085 Length=68723 Score = 113 bits (124), Expect = 2e-20 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | ||||||| ||| | | |||||||| ||||||||||||||||||||| Sbjct 36551 AAAAAAAAAAAATATTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 36610 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| ||||||||||||||| |||||| Sbjct 36611 GACGCTCTAACCAACTGAGCTAATAGGCCGT 36641 >seq61706 Length=24638 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| || |||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 21259 AAAAATAAATGGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 21200 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 21199 CGCTCTAACCAACTGAGCTAATGGGCC 21173 >seq4896 Length=80222 Score = 111 bits (122), Expect = 8e-20 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| ||| |||||||||| | | |||||||| ||||||||||||||||||||||||||| Sbjct 25497 AAAACAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCT 25438 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||| |||| Sbjct 25437 CTAACCAACTGAGCTAATAGGCC 25415 >seq4040 Length=70806 Score = 111 bits (122), Expect = 8e-20 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 14688 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 14629 Query 11512 CAACTGAGCTAATGGGCC--GTCGACGATTGTGATTTTT 11548 ||||||||||||| |||| || ||| || | |||||| Sbjct 14628 CAACTGAGCTAATAGGCCATGTTCACGTTTTTTATTTTT 14590 >seq9379 Length=37905 Score = 109 bits (120), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| | |||||| | ||| |||| |||||||| | | |||||||| ||||||||| Sbjct 36898 AAATA-ATAATTAACCATAAAATAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCG 36955 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 36956 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 36996 >seq6656 Length=45341 Score = 109 bits (120), Expect = 3e-19 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || |||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 29791 AAAAT-AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 29733 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 29732 TCTAACCAACTGAGCTAATAGGCC 29709 >seq2947 Length=138227 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 9912 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 9971 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 9972 CAACTGAGCTAATAGGCC 9989 >seq2586 Length=98820 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 96538 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 96479 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 96478 CAACTGAGCTAATAGGCC 96461 >seq868 Length=174922 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 29443 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 29384 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 29383 CAACTGAGCTAATAGGCC 29366 >seq1675 Length=146115 Score = 105 bits (116), Expect = 3e-18 Identities = 82/96 (85%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 11437 AATTAATAAAA--AATC-AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||||||| | || | ||| ||||| ||| | | |||||||| |||||||||||||| Sbjct 20304 AATTAATAATATTAAGCTAAAGTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 20245 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 20244 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 20209 >seq1927 Length=183773 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 166634 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 166575 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 166574 TGAGCTAATAGGCC 166561 >seq107 Length=373799 Score = 104 bits (114), Expect = 1e-17 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| || ||| || | || | ||||||||| | | |||||||| ||||||||| Sbjct 321590 AAAAATAAAAATAAAAATATATATTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 321649 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||| |||||||||| |||| Sbjct 321650 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 321690 >seq8281 Length=9294 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||| ||| | | |||||||| |||||||||||||||||||||||||| Sbjct 1110 AAAATAAA--TGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 1053 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 1052 TCTAACCAACTGAGCTAATAGGCC 1029 >seq67 Length=323240 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||| ||| | | |||||||| |||||||||||||||||||||||||| Sbjct 198746 AAAATAAA--TGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 198803 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 198804 TCTAACCAACTGAGCTAATAGGCC 198827 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261205922498140