Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq89515 576 4e-160 seq971 185 3e-42 seq3049 122 3e-23 seq10355 105 2e-18 seq5532 87.8 5e-13 >seq89515 Length=155578 Score = 576 bits (638), Expect = 4e-160 Identities = 726/989 (73%), Gaps = 6/989 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| ||||| ||||| | || |||||||| || | Sbjct 1524 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1465 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| | ||||| || || || || Sbjct 1464 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCT 1405 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 1404 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1345 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||| || || || | |||| | || || ||||| |||||||||| || ||| Sbjct 1344 ATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATC 1285 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| | | ||||| |||||||||||||| ||||| ||| |||| |||| Sbjct 1284 TGGGAAGC-GGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 1226 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 1225 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1166 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| |||| ||||| || |||||| |||| || | |||| ||| || Sbjct 1165 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 1106 Query 19709 TGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 ||| ||||| | | |||||| |||| ||||| |||||| ||||||||||||||| || | Sbjct 1105 TGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1047 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 | ||||||||||| ||||| ||| | |||||||| || || ||||| ||||||||||| | Sbjct 1046 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 987 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | || |||||| | || || ||||| |||||||| || || || ||| |||||||| | Sbjct 986 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGCGCTATGCATG 927 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | ||||| ||||| | |||| |||||| || || ||| ||| || | | Sbjct 926 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 867 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || | ||||| ||||| ||||| || |||||||| || || || || || || |||| Sbjct 866 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 807 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | |||| || || ||||||||| |||||| || |||||||| ||||| ||||| || | Sbjct 806 GCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 747 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCA 20127 || ||| || || || || || ||| | || | | || ||| ||||||||||||||| Sbjct 746 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCA 687 Query 20128 ACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCA 20186 |||| |||||||| || || ||||| || ||||||||| ||||| || |||| Sbjct 686 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAA-GGCCGTGTAATTAAT 628 Query 20187 ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAAT 20246 || ||||||||| | | || | |||||||| || | ||||||||||| || || ||| Sbjct 627 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 568 Query 20247 GCTCATAACTTCCCACTTGATTTAGCTTC 20275 |||||||||||||| || || ||||||| Sbjct 567 GCTCATAACTTCCCTCTAGACCTAGCTTC 539 >seq971 Length=113153 Score = 185 bits (204), Expect = 3e-42 Identities = 232/313 (74%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 19503 GCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGATGAGTGGTTATA 19561 || ||||| |||||||||| || ||||||||||| |||| | | ||||| |||||||| Sbjct 73188 GCTATAGGTTTGCACTTTTACCCAATCTGGGAAGC-GGCATCCGTTGATGAATGGTTATA 73130 Query 19562 CAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGC 19621 |||||| ||||| ||| |||| |||| | ||||||||| | || ||||| ||| Sbjct 73129 CAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACAT 73070 Query 19622 TGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATA 19681 ||| | ||||| |||| || | | || ||| |||| ||||| || ||||| Sbjct 73069 GGGTCGTGAGTGGAAACTTAGTTTCCATCTGGGTATGCGACCTTGGATTACTGTTGCATA 73010 Query 19682 TACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGA 19740 | || | || | |||| ||| | ||||| ||||| | | |||||| |||| ||||| | Sbjct 73009 TTCAACTCCTGTTGCAGCTGCTATCGCTGT-TTTCTTGATCTACCCAATTGGTCAAGGAA 72951 Query 19741 GTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCC 19800 ||||| ||||| ||||||||| || || ||||||||||| ||||| ||| | ||||||| Sbjct 72950 GTTTTTCTGATGATATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCC 72891 Query 19801 AAGCAGAACACAA 19813 | || || || || Sbjct 72890 AGGCTGAGCATAA 72878 >seq3049 Length=46004 Score = 122 bits (134), Expect = 3e-23 Identities = 134/178 (75%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015 ||||| ||||| ||||| || ||||||||||| || || || ||||| ||||| ||| Sbjct 6005 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGGTATTTTGGCCCATTA 5946 Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCT---TGCTACT 20072 || || ||||||||| |||||| || |||| ||| ||||| ||||| || ||||| | Sbjct 5945 ATCTTCCAATATGCTAGTTTCAACAACTCTCCTTCATTACACTTCTTCCTAGATGCTAAT 5886 Query 20073 TTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACC 20130 | || || || | || ||| | || | | || ||| |||||||||||||||||| Sbjct 5885 TGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACC 5828 >seq10355 Length=40529 Score = 105 bits (116), Expect = 2e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 19772 TGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 19831 ||||||||| ||||| ||| | |||||||| || || ||||| ||||||||||| || || Sbjct 16693 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 16752 Query 19832 CCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAG 19891 |||||| | || || ||||| |||||||| || || || || |||||||| || Sbjct 16753 TCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGCGCTATGCATGGTTC 16812 Query 19892 TTTGGTTACTTCCTCGATCATCAAGGAAACAACTGA 19927 ||||| ||||| | |||| |||||| || || Sbjct 16813 CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 16848 >seq5532 Length=39607 Score = 87.8 bits (96), Expect = 5e-13 Identities = 110/149 (74%), Gaps = 8/149 (5%) Strand=Plus/Minus Query 20113 GCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAAC 20171 ||||||||||||||||||| |||||||| || || ||||| || |||| ||||| Sbjct 3277 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA------AGATGATAGTCAAG 3224 Query 20172 GGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTT 20231 | | |||| | ||||||||| | | ||| | || | ||| || || |||||| Sbjct 3223 GCGGTG-TAATTAATATTTGGGCTGATATCATTAATTGTGCCAGCCTTGGTTTAGAAGTT 3165 Query 20232 ATGCACGAGCGCAATGCTCATAACTTCCC 20260 ||||| | || ||||||||||||||||| Sbjct 3164 ATGCATAAACGTAATGCTCATAACTTCCC 3136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144288059933340