Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq89515 529 3e-145 seq971 178 2e-39 seq10355 98.7 2e-15 seq5532 86.0 1e-11 seq559 84.2 4e-11 >seq89515 Length=155578 Score = 529 bits (586), Expect = 3e-145 Identities = 714/989 (72%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 ||||| ||||| |||| | || | || ||| | | || |||| |||||||||||| | Sbjct 1524 TTCTGTAACTGGATAACCAGCACCGAA-AACCGTCTTTACATTGGATGGTTTGGTGTTTT 1466 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || ||||| || || | Sbjct 1465 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTC 1407 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || |||||||| || |||| || | | ||||| |||| Sbjct 1406 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1347 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || ||||| ||||| || |||| |||| || || ||||| ||||| || || | Sbjct 1346 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAA 1287 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 |||||||||| ||| | ||||||| ||| | ||||| ||||||||||| | | | Sbjct 1286 TCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 1227 Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 | | |||||| | | || | | |||||||| | ||||||||||| | || Sbjct 1226 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1167 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || | |||||||| |||||||| |||||| |||||||| ||||| |||| ||| || Sbjct 1166 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 1107 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| | | |||||| | ||||| || || || || ||||||||| |||| | Sbjct 1106 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1047 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 | || || || |||||||||||| | |||||||| || || || |||||||||||||||| Sbjct 1046 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 987 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 |||| || ||| ||| || || ||| | ||||| || | ||||| |||||||| | Sbjct 986 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGCGCTATGCATG 927 Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227 |||| | || || ||| | ||| | |||||||| | || || || | | Sbjct 926 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 867 Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287 |||||| ||||| ||||| ||||| || ||||| ||||| || || ||||| || || | Sbjct 866 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 807 Query 212288 GTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCG 212347 | || | |||||||| ||||| ||||||||| | |||||||||||||| | Sbjct 806 GCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 747 Query 212348 CATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 212407 | | |||||||| | || | ||||| || || | |||||| |||| ||||| |||| Sbjct 746 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCA 687 Query 212408 ACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTA 212467 |||||||||| ||||| ||||||||||| || |||||| ||| || || || Sbjct 686 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATA 627 Query 212468 CTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATG 212527 |||||| |||| | ||||| | || ||||||||||||||||||||||| ||| | |||| Sbjct 626 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 567 Query 212528 CACACAACTTCCCACTTGACTTAGCATCT 212556 | || |||||||| || ||| |||| ||| Sbjct 566 CTCATAACTTCCCTCTAGACCTAGCTTCT 538 >seq971 Length=113153 Score = 178 bits (196), Expect = 2e-39 Identities = 244/341 (72%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 211753 ATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGG 211812 ||||| ||||| || |||| |||| || || ||||| ||||| || || |||||| Sbjct 73218 ATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGG 73159 Query 211813 GAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATCTTC 211872 ||||| ||| | ||||||| ||| | ||||| ||||||||||| | | | | | Sbjct 73158 GAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTA 73099 Query 211873 CACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGTTTA 211932 |||||| | | || | | |||||||| | ||||| ||||| | || | | Sbjct 73098 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGAAACTTAGTTTCCATCTG 73039 Query 211933 GGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTA 211992 |||||||| |||||||| |||||| |||||| | ||||| |||| ||| ||||||| Sbjct 73038 GGTATGCGACCTTGGATTACTGTTGCATATTCAACTCCTGTTGCAGCTGCTATCGCTGTT 72979 Query 211993 TTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCA 212052 ||| | | |||||| | ||||| || || || || | ||||||| |||| || || Sbjct 72978 TTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGATATGCCTCTAGGAATTTCT 72919 Query 212053 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAA 212093 || || |||||||||||| | |||||||| || || ||||| Sbjct 72918 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAA 72878 >seq10355 Length=40529 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 212053 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTC 212112 || || |||||||||||| | |||||||| || || || |||||||||||||||||||| Sbjct 16694 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 16753 Query 212113 CATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCT 212172 || ||| ||| || || ||| | ||||| || | |||| |||||||| ||||| Sbjct 16754 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGCGCTATGCATGGTTCC 16813 Query 212173 CTTGTTACATCTTCACTTATCCGTGAAACCAC 212204 | || || ||| | ||| | |||||||| Sbjct 16814 TTGGTAACTTCTAGTTTGATCAGGGAAACCAC 16845 >seq5532 Length=39607 Score = 86.0 bits (94), Expect = 1e-11 Identities = 117/164 (71%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 212393 GCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAG 212452 |||| ||||| |||||||||||||| ||||| ||||||||| | |||| || Sbjct 3277 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA------GATGATAGTCAAG 3224 Query 212453 GTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTA 212512 | || || || ||||| |||| | |||| | || | ||||||| | ||||||| Sbjct 3223 GCGGTGTAATTAATATTTGGGCTGATATCATTAATTGTGCCAGCCTTGGTTTAGAAGTTA 3164 Query 212513 TGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCT 212556 |||| || | ||||| || |||||||| | ||| |||| ||| Sbjct 3163 TGCATAAACGTAATGCTCATAACTTCCCTTTAGACCTAGCCTCT 3120 >seq559 Length=144516 Score = 84.2 bits (92), Expect = 4e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 212466 TACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAA 212525 |||| ||| |||| | |||| | || ||||| ||||||||||||||||||||| | || Sbjct 93052 TACTGGGGTTGATATCATTAATCGTGCCAACCTCGGTATGGAAGTTATGCACGAATGTAA 93111 Query 212526 TGCACACAACTTCCCACTTGACTTAGCATCT 212556 ||| || |||||||| || ||| |||| ||| Sbjct 93112 TGCTCATAACTTCCCTCTAGACCTAGCTTCT 93142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806651596203400