Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20]
89,515 sequences; 867,455,155 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq3095 125 8e-24
seq341 107 2e-18
seq58707 84.2 2e-11
>seq3095
Length=123113
Score = 125 bits (138), Expect = 8e-24
Identities = 432/669 (65%), Gaps = 23/669 (3%)
Strand=Plus/Minus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
|| || || |||| ||| || || || || |||||||| || || | || || ||
Sbjct 111876 TTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCCCCTGTAAACTGATCAAT 111817
Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304
||||| |||||||||| |||| | || ||| ||| | | || ||| | |
Sbjct 111816 TCCATCCAATCAAATGGGTTTTGAACATTGTATAATTTGCTGTATCCAAGTGCATTCAGC 111757
Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364
| |||||| ||||||||||| || ||||||| ||| | |||| |||||| |||| ||
Sbjct 111756 AGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATCACCATTCATTCCGACCAGG 111697
Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATT---TTTCTATAGAGACGGCTTCA---ACA 21418
||||||||| | || | || ||| | || ||| || || ||| |||
Sbjct 111696 GCACAAGGAAGAGCATCG--CAGACAA-ATTCCCTCTCGATATCCACCGCGTCAGCAACA 111640
Query 21419 ATTATATTTATT--ATCCTAGATGTACTAGGGGGATACA-ATAATTGTTTAAACATCAAA 21475
| | || | | ||||| | || || || | | || | || | ||
Sbjct 111639 AGTCCCTTGACTCGATCCTCGCTG----AGTTTCATCCTCAGAAGGCTGTAGAG--CAGG 111586
Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535
|| ||||||||||| || ||||| ||||| | ||||| || || ||||| |||||
Sbjct 111585 CAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAAT 111526
Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAAAGAA 21594
|| ||||||||||| | |||||||| ||||||||| | |||| | || ||| || |||||
Sbjct 111525 CCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAA 111467
Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654
||| || || ||| |||||| || | || || ||| || | |||||| |
Sbjct 111466 AATCCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAA---GGATTCTGAGCCGTC 111410
Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714
||||| ||||| || ||||| | || |||| || || || || || |
Sbjct 111409 AATCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTG 111350
Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774
||||| |||| || || || ||| |||| ||| |||||
Sbjct 111349 GAAAAGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACAT 111290
Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834
|| ||||| ||||| || ||||| ||||| || || |||||| | ||||| ||
Sbjct 111289 CTCGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGAT 111230
Query 21835 TTGAACCTC 21843
|||||||||
Sbjct 111229 TTGAACCTC 111221
>seq341
Length=228855
Score = 107 bits (118), Expect = 2e-18
Identities = 122/161 (76%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531
||| || ||||||||||| || || || ||||| | | || || || || || || ||
Sbjct 2768 CAAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGT 2827
Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAA 21590
||| || ||||||||||||| ||| |||| ||||||||||| |||| | || ||| || |
Sbjct 2828 TAATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCCCGAGA 2886
Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCA 21631
||||||| || |||||| ||| || || | || || |||
Sbjct 2887 AGAAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCA 2927
>seq58707
Length=1165
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/113 (78%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 21512 ATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATT 21571
||||| || || || || ||||| || ||||||||||| |||||||| ||||||||||
Sbjct 427 ATTAACTCGTTCGAGAAAGTTAATCCATACATTAATCCTCGCTTTTTTAGCCAAAATATT 486
Query 21572 GACGCAAATGC-TCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTA 21623
| ||| | || || ||| |||||||| || |||||| ||| || |||| ||
Sbjct 487 G-TGCAGAAGCTTCTTGAGAAGAAAATCCCTTCAACGCAAGCGAAGGCAAGTA 538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531305636248600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |