Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3095 125 8e-24 seq341 107 2e-18 seq58707 84.2 2e-11 >seq3095 Length=123113 Score = 125 bits (138), Expect = 8e-24 Identities = 432/669 (65%), Gaps = 23/669 (3%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 || || || |||| ||| || || || || |||||||| || || | || || || Sbjct 111876 TTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCCCCTGTAAACTGATCAAT 111817 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| |||||||||| |||| | || ||| ||| | | || ||| | | Sbjct 111816 TCCATCCAATCAAATGGGTTTTGAACATTGTATAATTTGCTGTATCCAAGTGCATTCAGC 111757 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 | |||||| ||||||||||| || ||||||| ||| | |||| |||||| |||| || Sbjct 111756 AGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATCACCATTCATTCCGACCAGG 111697 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATT---TTTCTATAGAGACGGCTTCA---ACA 21418 ||||||||| | || | || ||| | || ||| || || ||| ||| Sbjct 111696 GCACAAGGAAGAGCATCG--CAGACAA-ATTCCCTCTCGATATCCACCGCGTCAGCAACA 111640 Query 21419 ATTATATTTATT--ATCCTAGATGTACTAGGGGGATACA-ATAATTGTTTAAACATCAAA 21475 | | || | | ||||| | || || || | | || | || | || Sbjct 111639 AGTCCCTTGACTCGATCCTCGCTG----AGTTTCATCCTCAGAAGGCTGTAGAG--CAGG 111586 Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||||||||| || ||||| ||||| | ||||| || || ||||| ||||| Sbjct 111585 CAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAAT 111526 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAAAGAA 21594 || ||||||||||| | |||||||| ||||||||| | |||| | || ||| || ||||| Sbjct 111525 CCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAA 111467 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 ||| || || ||| |||||| || | || || ||| || | |||||| | Sbjct 111466 AATCCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAA---GGATTCTGAGCCGTC 111410 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 ||||| ||||| || ||||| | || |||| || || || || || | Sbjct 111409 AATCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTG 111350 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 ||||| |||| || || || ||| |||| ||| ||||| Sbjct 111349 GAAAAGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACAT 111290 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 || ||||| ||||| || ||||| ||||| || || |||||| | ||||| || Sbjct 111289 CTCGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGAT 111230 Query 21835 TTGAACCTC 21843 ||||||||| Sbjct 111229 TTGAACCTC 111221 >seq341 Length=228855 Score = 107 bits (118), Expect = 2e-18 Identities = 122/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 ||| || ||||||||||| || || || ||||| | | || || || || || || || Sbjct 2768 CAAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGT 2827 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAA 21590 ||| || ||||||||||||| ||| |||| ||||||||||| |||| | || ||| || | Sbjct 2828 TAATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCCCGAGA 2886 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCA 21631 ||||||| || |||||| ||| || || | || || ||| Sbjct 2887 AGAAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCA 2927 >seq58707 Length=1165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 21512 ATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATT 21571 ||||| || || || || ||||| || ||||||||||| |||||||| |||||||||| Sbjct 427 ATTAACTCGTTCGAGAAAGTTAATCCATACATTAATCCTCGCTTTTTTAGCCAAAATATT 486 Query 21572 GACGCAAATGC-TCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTA 21623 | ||| | || || ||| |||||||| || |||||| ||| || |||| || Sbjct 487 G-TGCAGAAGCTTCTTGAGAAGAAAATCCCTTCAACGCAAGCGAAGGCAAGTA 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531305636248600