Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3095 190 3e-43 seq6003 102 1e-16 seq58707 96.9 4e-15 seq1847 93.3 5e-14 seq1602 89.7 6e-13 >seq3095 Length=123113 Score = 190 bits (210), Expect = 3e-43 Identities = 593/910 (65%), Gaps = 16/910 (2%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAA--TGATATAT 33070 || ||||||||||| || | || || || ||||| ||||| || | || |||| || Sbjct 111876 TTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCCCCTGTAAACTGATCAAT 111817 Query 33071 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 33130 | |||| ||||||| || || |||||| || | ||| | |||| | | || | Sbjct 111816 T--CCATCCAATCAAATGGGTTTTGAACATTGTATAATTTGCTGTATCCAAGTGCATTCA 111759 Query 33131 TCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 33190 || |||||| || || ||||| || ||| |||||| |||| ||||||||| | | Sbjct 111758 GCAGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATCACCATTCATTCCGACCA 111699 Query 33191 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248 | | |||||||| ||||| | |||||| || || ||||| || | | Sbjct 111698 GGGCACAAGGAAGAGCATCGCAG--ACAAATTCCCTCTCGATATCCACCGCGTCAGCAAC 111641 Query 33249 AATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 33308 || | || || || || || | | | | | | | || || || Sbjct 111640 AAGTCCCTTGACTCGATCCTCGCTGAGTTTCATCCTCAGAAGGCTGTAGAGCAGGCAAGC 111581 Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368 ||||| ||||| | |||||| |||| |||| ||||| ||||| || | ||| || Sbjct 111580 AAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAATCCAGG 111521 Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCC 33428 ||||| ||||||||||| ||||||||||| | ||| ||| || ||||| || || Sbjct 111520 CATTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAAATCCC 111461 Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCCA 33485 ||| || ||||||||| | | | ||| | | | | || |||| ||||| Sbjct 111460 TTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGATTCTGAGCCGTCA---ATCCA 111404 Query 33486 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 | ||||| | ||||||||| |||||||| | || || || || | || || Sbjct 111403 GCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGAAAAG 111344 Query 33546 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33605 || || || | ||| || | ||| | || | | |||||| ||||| || || Sbjct 111343 CCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACATCTCGGA 111284 Query 33606 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 33665 ||| || || ||||| || ||||| || || || ||| | ||||| | || || || Sbjct 111283 ATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGATTTGAAC 111224 Query 33666 TTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33724 ||| | || | | | || || | ||| || || || ||||| ||| ||||||| Sbjct 111223 CTCTTT-CATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGGCAAAAA 111165 Query 33725 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33784 | || | ||||| || || |||| || || || || | ||||| ||| | | | Sbjct 111164 AGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTGCTGTA 111105 Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844 ||| | || | ||| || |||||| | |||||||| || ||||||||||| || |||| Sbjct 111104 CATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTTGTACA 111045 Query 33845 TGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAA 33904 | | ||| || | |||||| |||||||| || || | || || |||||| | | Sbjct 111044 TTTCCCAAATTTGGGGATATTGAATTGGGAACATGCAGAACCGATCTGTATTTGGGGTGA 110985 Query 33905 GGATGGGTTC 33914 |||||||||| Sbjct 110984 GGATGGGTTC 110975 >seq6003 Length=93342 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| |||||||| | |||||||| || || ||||||||| | ||| | ||||| Sbjct 81095 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGTGTAAACCATCGCTGAGACAATAGATGA 81154 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | ||||||| |||||||| | ||| || || || || | || | ||| || Sbjct 81155 TATGTTTTGATAGCTGCATCTATATCATCCTTG-TGGATCCCAACAGAAACCCTCATCAA 81213 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||| ||||| |||||||| | ||| | || || || | || ||| | || | Sbjct 81214 CATGTGTTGAGGCCTTTCAACAACCTTCCCTCTGATCTTTAAGAGATACGATCTCTCAAG 81273 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||||||||||||| | | || |||||||| || || || || Sbjct 81274 AGTTTTAAAACCAAAGAAATCATAATCAAAGTCTCTGTCATATATGAT 81321 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 ||||||||||| | |||| ||| |||| ||| | |||| || |||||||| ||| || Sbjct 80735 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 80794 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || ||| ||||| || || || || |||||| | ||||| || ||| || || Sbjct 80795 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 80854 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | ||| |||||||| || ||| ||| | || || ||| | || ||||| || Sbjct 80855 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 80914 Query 63552 CCCTCTATGCTATCATCGATCATG 63575 ||||| |||||||| || ||||| Sbjct 80915 CCCTCAATGCTATCTTCTTTCATG 80938 >seq58707 Length=1165 Score = 96.9 bits (106), Expect = 4e-15 Identities = 351/544 (65%), Gaps = 9/544 (2%) Strand=Plus/Plus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 |||| ||||| || || || | ||| ||||| || |||||||| ||||||||||| Sbjct 427 ATTAACTCGTTCGAGAAAGTTAATCCATACATTAATCCTCGCTTTTTTAGCCAAAATATT 486 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCT-- 33457 | ||| || || ||||| || ||||| || ||| ||||||| | | || Sbjct 487 GTGCAGAAGCTTCTTGAGAAGAAAATCCCTTCAACGCAAGCGAAGGCAAGTATACGCTTA 546 Query 33458 -CTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33516 || | | | || ||| ||||| | ||||| | ||||||||||| ||| Sbjct 547 GCTAAGGATTCTGAGCCGTCG---ATCCAGCGAGG-GCCCACTTGGCCTTCTTTTCCACA 602 Query 33517 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 33576 ||||| | || || || | | || || ||||| || || ||| || | |||| Sbjct 603 CAAGGAACGGTCTCGATTGTGTGGAAAAGCCTATTTTTCTCCTTCGAATCCTTGATATAA 662 Query 33577 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 33636 | || | || |||||| |||| || ||||| || || ||||| || || || || || Sbjct 663 GATTCAAGCAGAAGACTGAACATCTCGGAATGGATATTCTCAATCGCGATTTGGAACCCA 722 Query 33637 TAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCA 33696 || || | |||||| | || || || || | ||||| | || | || || Sbjct 723 TAAAACGCACGAGCCTCCGAGATTTGAACCTCCTTCATAAATCTTCTGGCGAGGTTCTCC 782 Query 33697 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA-TACATGTTTTATAAAATATTTTTC 33755 || || |||| ||| || ||||| | ||| || || || || |||| || || Sbjct 783 AAAACGATATCGTCTGAGGCGGCGAAAAAGGACAAGAACGTGCTTAATGAAATGCTTCTC 842 Query 33756 GTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGT 33815 ||| | | || | ||| | | ||||| | || | ||| || |||||| || | Sbjct 843 GTCCTCGATCAAATTTTCCCAGTGCTATATATCCTGGGACAAATCGACCTCTTCCGCTCT 902 Query 33816 CCAAAA-TGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGA 33874 |||||| ||| | |||||| || || ||||| ||||| || | ||| || ||||| | Sbjct 903 CCAAAACTGAGGTCTCTGCTTTCTTGTACATTTTCCAAATTTTGGGATACTGAATTGGAA 962 Query 33875 AAAT 33878 | || Sbjct 963 ACAT 966 >seq1847 Length=115635 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 ||||||||||| | |||| ||| |||| ||| | |||| || |||||||| ||| || Sbjct 24547 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 24606 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || ||| ||||| || || || || |||||| | ||||| || ||| || || Sbjct 24607 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 24666 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | ||| |||||||| || ||| ||| | || || ||| | || ||||| || Sbjct 24667 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 24726 Query 63552 CCCTCTATGCTATCATCGATCATG 63575 ||||| |||||||| || ||||| Sbjct 24727 CCCTCGATGCTATCTTCTTTCATG 24750 >seq1602 Length=196056 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| |||||||| | |||||||| || || ||||||||| | ||| | |||| | Sbjct 116011 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGAGTAAACCATCGCTGAGATAAGAGATGG 116070 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || | |||| | || || ||||| | ||| || || || | || | ||| ||| Sbjct 116071 TATGTTTTAATAACAGAATCGATATCATCCTTATGGATCCCAACAGAAACCCTCATCAAC 116130 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||| ||||| || || || | ||| | || || || || || || | || | Sbjct 116131 ATGTGTTGAGGCCTCTCCACAACCTTCCCTTGGATCTTTAAGAAATAAGACCTCTCAAGG 116190 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||||||||||| || | || |||||||| || || || || Sbjct 116191 GTTTTAAAACCAAAGTAATCATACTCAAAGTCTCTGTCATATATGAT 116237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622250161017400