Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3095 105 2e-17 seq341 104 6e-17 seq1847 84.2 6e-11 seq170 84.2 6e-11 >seq3095 Length=123113 Score = 105 bits (116), Expect = 2e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA 22539 || ||||| || || | | || |||||| || ||||| |||||||| || ||| Sbjct 111422 TCCTTCGCTGAGCGCATACTCGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCGGGAAGC 111481 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 || || || || |||||||||||||| |||| | | ||||| || |||| |||||||| Sbjct 111482 TTCTGCGCGATATTTTGGCTAAAAAAGCGTGGATTAATGCCTGGATTAACTTTTTCAAAC 111541 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 |||||||| |||||||||||| | || |||||||| || |||| || Sbjct 111542 GAGTTAATCTCGCGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGCTCTA 111594 >seq341 Length=228855 Score = 104 bits (114), Expect = 6e-17 Identities = 305/465 (66%), Gaps = 9/465 (2%) Strand=Plus/Minus Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA 22539 || || || || ||| | | || || ||| |||||||| |||||||| || ||| Sbjct 2935 TCCTTTGCTGAGCGTATACTCGCCTTCGCTTGCGTTGAAGGGATTTTCTTCTCGGGAAGC 2876 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 || || ||||| ||||||||||| || || | | | ||||| || |||| || || || Sbjct 2875 TTCTGCGCAATATTTTGGCTAAAGAAGCGAGGATTAATGCCTGGATTAACTTTCTCGAAC 2816 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAAT 22659 ||||| || ||||||||||| | || ||||||||||| |||| || | Sbjct 2815 GAGTTGATCTCTCGAGATGAGGGCTTACACTGTGATTTTGCGTGCTTGCTCTACAGCCTG 2756 Query 22660 CATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAA 22719 | | || ||||| | || || | |||||| | |||| || ||| Sbjct 2755 CTGAGGAT---GAAACTGAGTGAGGATCGAGTCAAGGGGATTATTGCTGATGCCGTAGAA 2699 Query 22720 CTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAA 22779 |||| | |||| ||||||| || | || || |||| || || | || Sbjct 2698 ATTGAGAGGGAATTTGTTTGCGAAGCCCTTCCTTGTGCCCTGGTTGGGATGAACGGTGAT 2639 Query 22780 TCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTA-TGC 22838 |||||| || ||| |||| || || ||||| || || | | ||| || || || Sbjct 2638 CTGATGAGTCAGTACATTGAATTCGTAGCTGATCGACTGTTGAATGAACTTGGGTACAGC 2579 Query 22839 AAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTT--GAAGGA 22896 ||| | || || || || |||||||| ||||||||| | | ||| || | || Sbjct 2578 AAATTA-TACAATGTGCAAAACCCATTTGATTGGATGGAATTGA--TCAGTTTGCAGGGG 2522 Query 22897 AAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCA 22941 || || |||||||| || || || |||||||||||||| |||||| Sbjct 2521 AAAACGAATTTCTTTGAGAAGAGGGTTGGTGAATACCAGAAAGCA 2477 >seq1847 Length=115635 Score = 84.2 bits (92), Expect = 6e-11 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||||||||| || | ||| || || || | |||||| |||| | Sbjct 24749 ATGAAAGAAGATAGCATCGAGGGCATTTATGATACTCTGAAAGAGTGTGCTGTTATCAGC 24690 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || || || ||||||||||| || | || || | ||||| || | | |||||||| Sbjct 24689 AAATCAGCTGGGGGAATTGGTGTCTCTGTTCATAACATCCGTGCTACTGGA-AGTTACAT 24631 Query 363741 TCGCGGCACA---GGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| || ||| |||| | || ||||| | ||||| ||||| || ||||| | | Sbjct 24630 TCGTGGAACAAATGGGGCA---TCCAATGGCATTGTTCCAATGCTGCGAGTGTTCAATGA 24574 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || || | || || || ||||| || || ||| | ||||| Sbjct 24573 CACAGCTCGATATGTTGATCAGGGAGGTGGCAAGAGGAAAGG 24532 >seq170 Length=341306 Score = 84.2 bits (92), Expect = 6e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 111685 CATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATC 111744 ||||| ||||| | ||| ||||||||||| | | || ||| || || || ||||||| Sbjct 143018 CATGTTATCTTGT-TGC-AGTTTTATGTAGCCAATGGCGAGCTATCGTGTCAGATGTATC 142961 Query 111745 AGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTA 111804 || | || |||||||| |||||||| || || ||||| || ||| || || ||| | | Sbjct 142960 AGTGCTCGGCTGATATGGGTCTTGGGGTGCCTTTTAACATCGCATCATATGCTCTATTGA 142901 Query 111805 CTTGCTTAATCGCTCATTTT 111824 | ||| | || |||||| || Sbjct 142900 CATGCATGATTGCTCATGTT 142881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301858769500730