Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1123 104 2e-17 seq10374 86.0 5e-12 seq203 86.0 5e-12 seq2537 82.4 7e-11 seq646 82.4 7e-11 >seq1123 Length=183110 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||| ||| | |||||| | || || ||| | Sbjct 67657 ATGCAAATCTTTGTCAAAACTCTTACTGGGAAAACCATTACCCTTGAGGTTGAGAGCTCT 67716 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||| || || || || || || || |||||| Sbjct 67717 GACACGATTGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCGGATCAA 67776 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| | |||||||| || ||||||| ||||| | | ||||| ||| Sbjct 67777 CAGAGATTGATTTTTGCTGGCAAGCAGCTTGAAGATGGCAGAACCCTTGCAGATTACAAC 67836 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 ||||| || || || ||||||| ||| |||| Sbjct 67837 ATTCAGAAGGAGAGCACCCTTCATTTGGTGCTAAG 67871 >seq10374 Length=62593 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || | || || || | ||||| | || || || | Sbjct 57861 AATGCAAATCTTTGTTAAGACTCTCACCGGTAAGACCATTACTCTTGAGGTAGAAAGCTC 57920 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||| || | || || ||||| || || ||||| || ||||| || || Sbjct 57921 CGACACCATTGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCGGACCA 57980 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 || || ||||||| || ||| || ||||||||||||| | | || | || || || | Sbjct 57981 GCAAAGGCTGATTTTCGCCGGTAAACAACTCGAAGATGGCCG-TACTTTGGCTGACTACA 58039 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||| || || || || ||||||| || | || |||| ||||| Sbjct 58040 ACATTCAGAAGGAGTCCACCCTTCATTTGGTCCTCAGGCTGAGGGGAGG 58088 >seq203 Length=254899 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || |||||| | || ||| | ||||| ||| Sbjct 80181 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAAACTATAACCTTGGAAGTTGAGAGTTCG 80122 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || || ||| || || ||||| || ||||| || ||| Sbjct 80121 GACACAATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATCCCTCCGGACCAA 80062 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || || | | ||||| ||||| ||||||| || | | | ||||||||| Sbjct 80061 CAAAGGCTTATATTTGCAGGCAAACAACTTGAAGATGGAAGGACCCTTGCGGATTATAAC 80002 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || |||| | ||||| || ||||||| || Sbjct 80001 ATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGAGGCTGAGAGGTGG 79955 >seq2537 Length=190147 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/144 (74%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| |||||||| ||||| ||||| || || | | || || ||| | ||| Sbjct 144241 GACAAAGAAGGTATACCTCCTGATCAGCAGAGGCTTATATTTGCTGGTAAACAATTGGAA 144300 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| | | || | ||| ||||| || || ||||| ||||| ||| ||||| | || || Sbjct 144301 GATGGCCG-GACCTTAGCAGATTACAATATCCAAAAGGAATCAACACTTCATCTTGTTTT 144359 Query 24203 AAGATTGAGAGGAGG-ACTATAAT 24225 || | || ||||| ||||| || Sbjct 144360 GAGGCTCAGGGGAGGAACTATGAT 144383 >seq646 Length=154290 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC-CAA 24049 ||||| | ||||| ||||| | ||||| || | |||||| | |||||||| | | Sbjct 48805 ATGCAGATTTTTGTCAAAACCCTCACTGGGAAGACAATTACCCTTGAAGTCGAAGAGCTC 48746 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| || || | |||||| || || ||||| || || || || || || || Sbjct 48745 CGACACTATTGATAATGTCAAAGCTAAAATCCAGGACAAGGAGGGAATCCCACCAGACCA 48686 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 || || ||||| | || || ||||| || || || | | ||| | | || || |||| Sbjct 48685 GCAAAGGCTGATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGAA-CATTGGCAGACTATA 48627 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||| || || || || | || || ||| | || ||||| ||||| Sbjct 48626 ACATTCAGAAGGAGTCAACTCTGCACTTGGTGCTGAGGTTGAGGGGAGG 48578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429466955274825