Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq10374 104 2e-17 seq7954 104 2e-17 seq203 98.7 8e-16 seq646 96.9 3e-15 seq1123 93.3 4e-14 seq10884 84.2 2e-11 seq4136 84.2 2e-11 >seq10374 Length=62593 Score = 104 bits (114), Expect = 2e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 115280 TTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG 115339 ||| | ||||| ||||| || ||||| | || || || || || ||| ||||| ||| Sbjct 57628 TTACAGATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACTATCACCCTCGAAGTGGAA 57687 Query 115340 TCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGT 115398 | || || ||| |||| ||||| || || || || ||||| |||| Sbjct 57688 AGCTCTGATACCATTG-ACAACGTAAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCC 57746 Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 || |||||||||||||||| ||| || |||||| | || |||| | ||| |||| || Sbjct 57747 AGACCAGCAAAGACTTATTTTTGCTGGTAAACAACTTGAGGATGGCCGTACCCTGGCAGA 57806 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| ||||| || || ||||| ||| | ||| |||| | |||||| | ||||||| Sbjct 57807 TTACAACATCCAGAAGGAGTCCACTCTTCATTTGGTCCTCAGATTGAGGGGAGGAA 57862 >seq7954 Length=38498 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || || ||||||||||||||||| | || |||| | Sbjct 10584 ATGCAAATTTTTGTCAAGACCCTGACGGGAAAAACCATTACTTTGGAGGTGGAGAGTTCC 10525 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || ||| || || || ||| |||| || || Sbjct 10524 GACACAATTGATAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAA 10465 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| |||| ||| || |||||| | ||||||| | || |||||||||| || Sbjct 10464 CAAAGACTCATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTGGCCGATTACAAT 10405 Query 115466 ATTCAAAAAGAGTCTAC 115482 || ||||| ||||| || Sbjct 10404 ATCCAAAAGGAGTCCAC 10388 >seq203 Length=254899 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || | || |||||||| || ||| | ||| ||| Sbjct 80181 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAAACTATAACCTTGGAAGTTGAGAGTTCG 80122 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || |||||| ||||| ||||| |||| || || Sbjct 80121 GACACAATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATCCCTCCGGACCAA 80062 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||| ||||| | ||| ||||||||| | ||||||| | ||| | || ||||||||| Sbjct 80061 CAAAGGCTTATATTTGCAGGCAAACAACTTGAAGATGGAAGGACCCTTGCGGATTATAAC 80002 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || ||||| || | || | |||||||| || |||| || Sbjct 80001 ATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGAGGCTGAGAGGTGG 79955 >seq646 Length=154290 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CGGAGTCCAG 115344 ||||| |||||||||||||| ||||| || || || |||||| | ||| || || | Sbjct 48805 ATGCAGATTTTTGTCAAAACCCTCACTGGGAAGACAATTACCCTTGAAGTCGAAGAGCTC 48746 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||||| ||| | || ||| ||||| || || || || |||| || || Sbjct 48745 CGACACTATTGATAATGTCAAAGCTAAAATCCAGGACAAGGAGGGAATCCCACCAGACCA 48686 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || || | || || || || | || || | | ||| |||| || ||||| Sbjct 48685 GCAAAGGCTGATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGAACATTGGCAGACTATAA 48626 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| || ||||| ||| | || ||||| |||| ||| | ||||| Sbjct 48625 CATTCAGAAGGAGTCAACTCTGCACTTGGTGCTGAGGTTGAGGGGAGG 48578 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || || || || ||||||||||| | || |||| | | Sbjct 49033 ATGCAGATTTTCGTCAAGACCCTTACCGGGAAAACCATTACTTTGGAGGTGGAGAGCTCC 48974 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || ||| || || || || |||||| |||| || || Sbjct 48973 GACACCATTGATAATGTTAAAGCCAAGATACAAGACAAGGAAGGCATCCCACCGGACCAA 48914 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || ||||| | || || ||||| | || |||| | || |||| ||||| ||| Sbjct 48913 CAGAGGCTTATCTTCGCTGGTAAACAGCTTGAGGATGGCCGTACTTTGGCTGATTACAAC 48854 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 ||||| || ||||| ||| | || |||||||||| Sbjct 48853 ATTCAGAAGGAGTCCACTCTCCACTTGGTGTTGAG 48819 >seq1123 Length=183110 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| || || || |||||||||||| | || ||| | Sbjct 67657 ATGCAAATCTTTGTCAAAACTCTTACTGGGAAAACCATTACCCTTGAGGTTGAGAGCTCT 67716 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | ||||| || || || || ||||| || || | ||| ||||| Sbjct 67717 GACAC-GATTGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCGGATCA 67775 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || ||| | |||| ||| ||||| || | ||||||| || |||| | || ||||| || Sbjct 67776 ACAGAGATTGATTTTTGCTGGCAAGCAGCTTGAAGATGGCAGAACCCTTGCAGATTACAA 67835 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| || ||| || | ||| ||||| | || | || ||||| Sbjct 67836 CATTCAGAAGGAGAGCACCCTTCATTTGGTGCTAAGGCTACGCGGAGG 67883 >seq10884 Length=505 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || |||||||| || || || ||| | || ||| | Sbjct 264 ATGCAGATTTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTTGAGGTCGAGAGCTTA 205 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| |||| || ||| ||||||| ||||| || || |||| || || Sbjct 204 GATACCATTG-ACAATGTCAAAGCAAAAATTCAGGATAAGGAGGGTATCCCACCAGACCA 146 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | || || || || | || |||| | || |||| || || || Sbjct 145 GCAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGTACTTTGGCAGACTACAA 86 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| |||||||| | || ||||||||||| | || || || Sbjct 85 TATTCAAAAGGAGTCTACCCTTCACTTGGTGTTGAGACTTCGTGGTGG 38 >seq4136 Length=93312 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || ||||| || || ||||| |||||| | || || | Sbjct 34937 AATGCAAATTTTTGTTAAGACGCTTACTGGGAAAACTATTACCCTTGAGGTTGAAAGCTC 34878 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| | || || ||||| || || || ||| |||| || || Sbjct 34877 CGACACCATTGATAATGTTAAGGCTAAAATCCAAGACAAGGAGGGCATCCCACCAGACCA 34818 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || || ||||| | || || ||||| | || |||| | || |||| || ||||| Sbjct 34817 ACAGAGGCTTATCTTCGCTGGTAAACAGCTTGAGGATGGCCGTACTTTGGCTGACTATAA 34758 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 |||||||| ||||| ||| | || |||||||||| Sbjct 34757 TATTCAAAAGGAGTCCACTCTCCACTTGGTGTTGAG 34722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424879964981800