Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq62369 165 4e-36 seq86170 118 5e-22 seq59516 95.1 6e-15 >seq62369 Length=566 Score = 165 bits (182), Expect = 4e-36 Identities = 249/354 (70%), Gaps = 0/354 (0%) Strand=Plus/Minus Query 65393 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 65452 || ||||| || || ||| | | | || ||| ||| || |||||||| || ||| Sbjct 354 GAGGTCATCCCGACGGGCGCCACGACGCTCGACATCGCGCTCGGCATCGGCGGACTGCCG 295 Query 65453 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTC 65512 | ||||| || || || |||||||| || || || || || ||| | || | || Sbjct 294 CGCGGCCGTGTCGTCGAGATCTACGGTCCGGAGTCGTCGGGTAAGACGACCGTCGCCCTG 235 Query 65513 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 65572 |||||||||||||| || ||| |||||||| ||| |||| ||||||||| |||||| Sbjct 234 CACGCGGTGGCCAACGCCCAGCGCGCCGGTGGTGTCGCGGCCTTCATCGACGCCGAGCAC 175 Query 65573 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 65632 | || ||||| || |||||| |||||| || ||| |||| ||| || | Sbjct 174 GCGCTCGACCCCGACTACGCCCGCAAGCTCGGCGTCGACACCGACGCCCTGCTGATCTCG 115 Query 65633 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65692 ||||| |||| || |||||||| || ||||||| ||| | || || || |||| Sbjct 114 CAGCCCGACAGCGGTGAGCAGGCTCTCGAGATCGCCGACATGCTGATCCGCTCCGGCGCC 55 Query 65693 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTC 65746 || |||| ||||| | ||||| || ||||| || ||||| ||||||||| || Sbjct 54 CTCGACATCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATC 1 >seq86170 Length=626 Score = 118 bits (130), Expect = 5e-22 Identities = 173/241 (72%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 65996 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAC 66055 ||||||||||||||||| || |||||||||||||||||||| ||||||||| | | Sbjct 601 GTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGCTCGCCCCGCCGTTCAAGCAG 542 Query 66056 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 66115 ||||||||| | || ||||||| |||||||| || |||| | || ||||| | Sbjct 541 GCCGAGTTCGACATCATGTACGGCCAGGGCATCAGCCGCGAGGGCAGCCTGATCGAC--G 484 Query 66116 GCCGTGTCG-CA-GGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGA 66173 | | |||| || || ||||| ||| | |||||||||| || ||||| | | | Sbjct 483 TCGGCGTCGACATCGGTCTGGTCCGCAAGGCCGGCGCCTGGTACACGTACGACGGCGACC 424 Query 66174 ACGTCGCTCAGGGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACATCACCG 66233 | | | |||||||||| ||| | |||| ||||||| |||||| ||| | ||| Sbjct 423 AGCTGGGTCAGGGCAAGGAGAAGTCGCGGCAGTTCCTCAAGGACAACCCCGACCTGGCCG 364 Query 66234 A 66234 | Sbjct 363 A 363 >seq59516 Length=1985 Score = 95.1 bits (104), Expect = 6e-15 Identities = 215/314 (68%), Gaps = 17/314 (5%) Strand=Plus/Minus Query 59264 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTC 59322 || |||||| |||||||| |||||| ||||| |||||| || | | || | | || Sbjct 1271 TCATCGGCAACCTGACCGACGACCCGGAGCTCAAGTTCACTCCTTCGGGCGCCG-CAGTT 1213 Query 59323 GCCAACTTCACCGTCGTGTCCAA----CGAACGCCGCCGCGACGCCCAGGGCAAC---TG 59375 |||||||||||||||| ||| | ||||| || ||| ||| |||| || Sbjct 1212 GCCAACTTCACCGTCGCGTCGACGCCTCGAAC----CCTCGATCGTCAGACCAACGAGTG 1157 Query 59376 GGTCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGT 59435 | |||||||| || ||| | |||||| || ||||||| | |||||||||||| Sbjct 1156 GAAGGACGGCGAGGCTCTGTTCATTCGCTGCGCCGCCTGGCGCCAGCTCGCCGAGAACGT 1097 Query 59436 GGCGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCA-GCGCT 59494 || || || ||||| || |||| |||||||| || ||| || |||| ||| Sbjct 1096 CGCCGAGTCGCTGCAGAAGGGTCAGCAGGTCATCGTCCAGGGCCCGCT-GAGCATCCGCA 1038 Query 59495 CCTTCGAGACCAAGGAGGGCGACAAGC-GCACCGTCATCGAGGTGGAGGTAGACGAGATC 59553 || |||| |||| || | || |||| | ||||| || ||| |||||||| Sbjct 1037 ACTACGAGCGTCAGGACGG-ATCGCGCGGCACGAGCGTCGAGATGACGGTCAACGAGATC 979 Query 59554 GGCCCGTCGCTGCG 59567 || ||||||||||| Sbjct 978 GGTCCGTCGCTGCG 965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237960909668260