Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq10374 93.3 3e-14 seq7954 89.7 4e-13 seq3534 89.7 4e-13 seq1123 89.7 4e-13 seq646 87.8 1e-12 seq203 87.8 1e-12 seq43 86.0 4e-12 >seq10374 Length=62593 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || ||||| || || ||| |||| ||| | | Sbjct 58774 ATGCAAATTTTTGTGAAGACCTTGACCGGCAAGACGATCACCTTGGAGGTGGAGAGCTCG 58833 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| ||||| |||||| | || | ||||| Sbjct 58834 GACACCATTGACAATGTCAAGGCAAAAATCCAGGATAAGGAGGGTATTCCACCAGACCAA 58893 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || || || || ||| || |||| || ||||| Sbjct 58894 CAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACCTTGGCGGACTACAAC 58953 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||| || |||||||| || |||| Sbjct 58954 ATCCAGAAAGAGTCTACTCTGCACTTGGT 58982 >seq7954 Length=38498 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | ||||| ||||||||||| |||| ||| | Sbjct 10584 ATGCAAATTTTTGTCAAGACCCTGACGGGAAAAACCATTACTTTGGAGGTGGAGAGTTCC 10525 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| || || ||||| | || ||||| Sbjct 10524 GACACAATTGATAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAA 10465 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || |||||||| |||||||| |||||| || || |||||||||||||| Sbjct 10464 CAAAGACTCATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTGGCCGATTACAAT 10405 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||| || || || || |||| | ||| | || || || Sbjct 10404 ATCCAAAAGGAGTCCACCCTGCACTTGGTCCTCCGTCTTCGTGGTGG 10358 >seq3534 Length=113076 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| ||| ||||| |||| ||||| ||||| |||||||| |||||| | ||| Sbjct 92646 GACAAAGAAGGTATACCTCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAATTGGAA 92705 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT- 22045 ||| | || |||| ||||||||||| || |||||||| || ||||| | || || Sbjct 92706 GATGGACGGACCTTGGCAGATTACAATATCCAAAAGGAATCAACACTTCACCTCGTTTTG 92765 Query 22046 ACGTTTACGAGGAGGA 22061 | | ||| |||||||| Sbjct 92766 AGGCTTA-GAGGAGGA 92780 >seq1123 Length=183110 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || || |||||||||||| | || || | | Sbjct 67657 ATGCAAATCTTTGTCAAAACTCTTACTGGGAAAACCATTACCCTTGAGGTTGAGAGCTCT 67716 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| || || ||||| ||||| | || | ||| Sbjct 67717 GACACGATTGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCGGATCAA 67776 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || ||||||||||| || || |||||| | ||| | || |||||||| Sbjct 67777 CAGAGATTGATTTTTGCTGGCAAGCAGCTTGAAGATGGCAGAACCCTTGCAGATTACAAC 67836 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || |||||| |||| || | |||| ||||| Sbjct 67837 ATTCAGAAGGAGAGCACCCTTCATTTGGTGCTAAGGCTACGCGGAGG 67883 Score = 89.7 bits (98), Expect = 4e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| || ||||||||||| || || || |||||| | || |||| |||| Sbjct 68684 ACCAGCAGAGGCTAATCTTTGCTGGTAAGCAGCTTGAAGATGGACGTACGTTGGCTGATT 68743 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||| ||||||||||||||||| |||||| |||| || Sbjct 68744 ACAACATTCAGAAGGAATCTACCCTTCATTTGGTGTT 68780 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || |||||||| | ||| |||| |||||| | || |||||||||||||| |||||| Sbjct 67978 GACAAAGAGGGCATTCCTCCGGACCAGCAGAGATTGATTTTTGCTGGCAAACAGCTAGAA 68037 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | ||| | || ||||||||||| |||||||| || ||||| |||| || Sbjct 68038 GATGGCAGAACACTTGCGGATTACAATATCCAGAAGGAGAGCACCCTTCACTTGGTGCTA 68097 Query 22047 CGTTTACGAGGAGGA 22061 | | || |||||| Sbjct 68098 AGGCTCCGTGGAGGA 68112 >seq646 Length=154290 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || | || || |||||||| || | || |||| | || Sbjct 48576 ATGCAGATTTTTGTTAAGACTCTGACTGGAAAAACCATCACTTTAGAGGTGGAAAGCTCA 48517 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | || |||||| || || |||||| | ||| |||| Sbjct 48516 GATACGATTGACAATGTAAAAGCGAAAATTCAGGACAAGGAGGGTATCCCTCCTGACCAG 48457 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || || || || ||| || ||| | || || ||||| Sbjct 48456 CAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGAAGGACTCTCGCTGACTACAAC 48397 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| ||||| ||||| Sbjct 48396 ATCCAGAAGGAGTCTACCCTTCA 48374 >seq203 Length=254899 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || ||||| || || ||||| ||||| ||||| ||| || Sbjct 79953 ATGCAAATTTTCGTCAAGACATTGACAGGGAAAACTATTACTTTGGAAGTTGAAAGTTCA 79894 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| |||||| ||||| || || | || | |||| Sbjct 79893 GACACAATCGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGACCAG 79834 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||| || ||||| || || || | ||| | || ||||||||| Sbjct 79833 CAGAGGTTGATCTTTGCCGGGAAACAGCTCGAGGACGGGAGGACTCTTGCTGATTACAAT 79774 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || || |||||||| |||||||| Sbjct 79773 ATCCAAAAGGAATCAACTCTTCA 79751 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || ||||| || ||| ||||| || | Sbjct 80181 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAAACTATAACCTTGGAAGTTGAGAGTTCG 80122 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| |||||| ||||| || || | ||| ||||| Sbjct 80121 GACACAATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATCCCTCCGGACCAA 80062 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || ||||| ||||| ||||||||||| |||||| || || | || ||||| || Sbjct 80061 CAAAGGCTTATATTTGCAGGCAAACAACTTGAAGATGGAAGGACCCTTGCGGATTATAAC 80002 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| || || ||||| Sbjct 80001 ATCCAGAAGGAGTCGACCCTTCA 79979 >seq43 Length=356683 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || | || || || || || ||| | || || | || Sbjct 120077 ATGCAGATTTTTGTTAAGACCCTCACAGGGAAGACAATCACCCTCGAGGTTGAGAGCTCA 120018 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||||||| |||||||||||| | || | |||| Sbjct 120017 GATACCATTGACAATGTCAAGGCAAAAATTCAGGATAAAGAGGGTATCCCACCAGACCAG 119958 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||| ||| ||||| || || ||| ||| |||| || |||||| Sbjct 119957 CAGAGGCTGATCTTTGTTGGTAAACAGCTCGAGGATGGTCGTACTTTGGCAGACTACAAT 119898 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||| ||||| || || |||| |||| || Sbjct 119897 ATTCAAAAGGAGTCAACCTTTCACTTGGTGTT 119866 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || |||| || || || || || | || ||| || Sbjct 119393 ATGCAGATTTTTGTCAAGACCCTAACAGGGAAGACAATCACACTTGAGGTTGAAAGTTCA 119334 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||||||| ||||| |||||| | || | |||| Sbjct 119333 GATACCATTGACAATGTCAAGGCAAAAATTCAGGATAAGGAGGGTATCCCACTGGACCAG 119274 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||| |||||||| || || || ||| || |||| |||||||| Sbjct 119273 CAGAGGCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCGGTACCTTGGCAGATTACAAC 119214 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||||||||| || ||||| || ||||| Sbjct 119213 ATTCAGAAGGAGTCGACTCTGCACTTGGTA 119184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357734098713310