Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq341 147 4e-30 seq3095 129 1e-24 >seq341 Length=228855 Score = 147 bits (162), Expect = 4e-30 Identities = 459/702 (65%), Gaps = 14/702 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || || ||| ||||| || || ||| | || || || |||| Sbjct 3313 ATGTACAAGAAAGCAGAGGCCTCGTTTTGGACGGCGGAAGAGGTCGATTTGTCCCAGGAT 3254 Query 42369 A--CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGG 42426 | | || |||||| |||| ||||| |||| ||| |||| | || |||| || | Sbjct 3253 ATACAGCA--CTGGGAAAAACTGACTGAGGACGAGAAGCATTTCATTAAGCACATTCTTG 3196 Query 42427 CCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAG 42486 |||| ||||||||||| |||||||| || |||||||| || ||||||||||| | Sbjct 3195 CCTTTTTCGCCGCCTCAGACGGCATCGTTTTGGAGAACCTCGCTGGAAGGTTCATGAAGG 3136 Query 42487 AGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 |||| || || ||||| || ||| || || || ||||| || || || ||||| | Sbjct 3135 AGGTTCAAATCTCGGAGGCTCG-TGCGTTTTATGGGTTCCAAATCGCGATTGAGAATATC 3077 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 || |||||| ||||| || || | | || ||| |||| | | ||| || Sbjct 3076 CATTCTGAGATGTACAGTCTTCTTCTTGAATCTTATATCAAGGATTCGGAGGAGAAGAAT 3017 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 |||| ||| | || || ||||| | || || | |||||||||| | ||||| ||| Sbjct 3016 AGGCTTTTCCACGCAATCGAGACCGTTCCTTGTGTGGAGAAGAAGGCCAAGTGGGCCCTC 2957 Query 42666 AACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 ||||||||| | | || | || | ||| | | | ||||| | ||| Sbjct 2956 CGCTGGATCGATGGCTCAGA---GTCCTTTGCTGAGCGTATACTCGCCTTCGCTTGCGTT 2900 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG 42785 || || || ||||||||||| |||| | | || || ||||| ||| || | | Sbjct 2899 GAAGGGATTTTCTTCTCGGGAAGCTTCTGCGCAATATTTTGGCTAAAGAAGCGAGGATTA 2840 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 ||||| ||| | || ||||||||||| | ||| | || ||||| | || | || Sbjct 2839 ATGCCTGGATTAACTTTCTCGAACGAGTTGATCTCTCGAGATGAGGGCTTACACTGTGAT 2780 Query 42846 TTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGG 42905 ||||| || | || ||| |||| || ||| || | |||| || ||| | Sbjct 2779 TTTGCGTG---CTTGCTCTACAGCCTGCTGAGGATGAAACTGAGTGAGGATCGAGTCAAG 2723 Query 42906 GCCATCATCACGGAGGCCGTGGAGATCGAGAAGG-AGTTCCTCACGCAGTCGCTGCCCGT 42964 | || || | || ||||| || || |||| || | || | || || | | | || Sbjct 2722 GGGATTATTGCTGATGCCGTAGAAATTGAGAGGGAATTTGTTTGCGAAGCCCTTCCTTGT 2663 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 | ||||||| || |||||| || || ||| | ||||||| Sbjct 2662 G-CCCTGGTTGGGATGAACGGTGATCTGATGAGTCAGTACAT 2622 >seq3095 Length=123113 Score = 129 bits (142), Expect = 1e-24 Identities = 364/554 (66%), Gaps = 9/554 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| ||||| || || ||| |||| || || |||| Sbjct 111044 ATGTACAAGAAGGCAGAGGCCTCGTTTTGGACGGCGGAAGAGGTTGATTTGTCCCAGGAT 111103 Query 42369 --ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGG 42426 || || |||||| | || | ||| | || ||| |||| | || | | || | Sbjct 111104 GTACAGCA--CTGGGATAAATTGACCGAGGATGAGAAGCATTTCATTAAGCATGTTCTTG 111161 Query 42427 CCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAG 42486 |||| || |||||||| |||||||| || ||||| || || ||||||||||||| Sbjct 111162 CCTTTTTTGCCGCCTCCGACGGCATTGTTTTGGAGAATCTAGCTGGGAGGTTCATGAAAG 111221 Query 42487 AGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 |||| || || |||||||| ||| || || || |||||||| || || ||||| | Sbjct 111222 AGGTTCAAATCTCGGAGGCGCG-TGCTTTTTATGGGTTCCAGATCGCGATTGAGAATATC 111280 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 || || ||| ||||| || || | | || || |||| | | ||| || Sbjct 111281 CATTCCGAGATGTACAGTCTTCTTCTTGAGTCCTATATAAAGGATTCGGAGGAGAAGAAT 111340 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 |||| ||| | || || ||||| | || || | ||||||||| | ||||| ||| Sbjct 111341 CGGCTTTTCCACGCAATCGAGACCGTTCCTTGTGTTGGGAAGAAGGCCAAGTGGGCCCTC 111400 Query 42666 AACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 |||||| || | | || | | |||| ||| | | | |||||| | |||| Sbjct 111401 CGCTGGATTGACGGCTCAGA---ATCCTTCGCTGAGCGCATACTCGCCTTTGCTTGCGTC 111457 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG 42785 || || || ||||||||||| |||| | | || || ||||| || || | | Sbjct 111458 GAAGGGATTTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGTGGATTA 111517 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 ||||| ||| | || || || ||||| | ||| | || ||||| | || | || Sbjct 111518 ATGCCTGGATTAACTTTTTCAAACGAGTTAATCTCGCGAGATGAGGGTTTACACTGTGAT 111577 Query 42846 TTTGCCTGCCTCCT 42859 ||||| ||||| || Sbjct 111578 TTTGCTTGCCTGCT 111591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943282543456400