Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1123 95.1 1e-14 seq10374 87.8 1e-12 seq979 87.8 1e-12 seq43 87.8 1e-12 seq4136 86.0 5e-12 seq646 84.2 2e-11 >seq1123 Length=183110 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| ||||||| ||||| |||||||||||||| || |||||||| || Sbjct 68111 CCTCCACGGAGCCTTAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATATTGTAATCCGCA 68052 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || | || || | || ||||| ||||| |||| | |||||| ||| || Sbjct 68051 AGTGTTCTGCCATCTTCTAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCCGGAGGA 67992 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || |||||||||| |||||| ||| | | | | | |||| | ||| Sbjct 67991 ATGCCCTCTTTGTCCTGGATTTTTGCCTTGACGTTGTCAATAGTGTCAGAACTTTCCACC 67932 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||||| || || || || || || |||||||| |||||||| Sbjct 67931 TCAAGTGTTATAGTCTTCCCTGTAAGGGTCTTCACAAAAATTTGCAT 67885 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| ||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 67883 CCTCCGCGTAGCCTTAGCACCAAATGAAGGGTGCTCTCCTTCTGAATGTTGTAATCTGCA 67824 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || | || || | |||||||| ||||| |||| | ||| |||||| Sbjct 67823 AGGGTTCTGCCATCTTCAAGCTGCTTGCCAGCAAAAATCAATCTCTGTTGATCC 67770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||||| || ||||| |||||| || ||| ||||||||||||||||| || Sbjct 68340 ACCACCACGCAGCCTCAACACCAAATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGC 68281 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || | || || | ||||| || || || || || | ||||||||| || Sbjct 68280 TAGGGTCCGGCCATCCTCAAGCTGCTTCCCAGCGAAAATAAGCCTCTGCTGATCAGGGGG 68221 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | || |||||||||| || || ||| | | | | | |||| | | ||| Sbjct 68220 AATGCCCTCTTTGTCCTGGATCTTAGCCTTGACGTTATCAATAGTATCCGAACTTTCCAC 68161 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || | ||||| || || ||||| || || |||||||| ||||||||| Sbjct 68160 CTCAAGTGTTATAGTCTTGCCGGTAAGGGTCTTCACAAATATTTGCATT 68112 >seq10374 Length=62593 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || | || ||||||| || || ||||||||||||||||||||||||||||| Sbjct 58316 CCTCCCCTTAACCTGAGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGCT 58257 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||| ||||| |||| | ||||| || || Sbjct 58256 AGAGTACGGCCATCCTCCAGCTGCTTGCCTGCAAAAATCAATCTTTGCTGGTCTGGAGGA 58197 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGAT-TCGC 34078 | | |||||||||| | | || |||| | || | | |||| || | ||| Sbjct 58196 ATACCCTCTTTGTCC-TGGATCTTGGCTTTGACGTTGTCAATGGTGTCAG-AGCTCTCGA 58139 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||||| || || || || || ||||| |||||||||||||| Sbjct 58138 CCTCGAGAGTTATGGTCTTGCCAGTCAGGGTTTTAACAAAGATTTGCAT 58090 >seq979 Length=283929 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| ||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 158336 CCTCCCCTTAGCCTAAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCTGCT 158277 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||| |||||||| ||||| |||| | ||||| || Sbjct 158276 AGAGTCCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAATCTTTGCTGGTC 158224 >seq43 Length=356683 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| || ||| |||| || || || ||||||||||||||||||||||||| Sbjct 119167 CCTCCCCTCAACCTCAGTACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAATCTGCC 119226 Query 33961 AA-TTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || | ||| | || || | |||||||| || || ||||| | |||||| |||| || Sbjct 119227 AAGGTACCGC-CATCCTCGAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCCAGTGG 119285 Query 34020 CACGCTCTCTTTGTCCATAATTTTT 34044 | | ||| || ||| ||||||| Sbjct 119286 GATACCCTCCTTATCCTGAATTTTT 119310 >seq4136 Length=93312 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| || ||| |||| || || || ||||||||||||||| || ||||| Sbjct 34481 ACCTCCCCTCAACCTCAGGACCAAGTGCAGAGTTGACTCCTTCTGAATGTTATAGTCTGC 34540 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 |||| ||| |||| || | ||||| || || || ||||| | |||||| || || Sbjct 34541 CAATGTTCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGG 34600 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | | ||| |||||| ||||| ||||| | | | | |||| | || | || Sbjct 34601 GATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTTATCAATAGTATC-GGAGCTCTCAA 34659 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || ||||| || || || || || || ||||| || ||||| Sbjct 34660 CTTCAAGGGTAATTGTCTTCCCAGTAAGGGTCTTGACAAAAATCTGCAT 34708 >seq646 Length=154290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/237 (68%), Gaps = 19/237 (8%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| || |||||||| || || || ||||||||||||||| || |||||| Sbjct 48578 CCTCCCCTCAACCTCAGCACCAAGTGCAGAGTTGACTCCTTCTGAATGTTATAGTCTGCC 48637 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| ||| |||| || | ||||| || || || ||||| | ||||| || || Sbjct 48638 AATGTTCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGG 48697 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA- 34079 | | ||| |||||| | |||| |||| | ||| ||||| ||| ||| | Sbjct 48698 ATTCCCTCCTTGTCC-TGGATTTTAGCTT--------TGACATTATCAATAGTGTCGGAG 48748 Query 34080 ---TTCGAC------CGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||||| || ||||| || || || || ||||| ||||| || ||||| Sbjct 48749 CTCTTCGACTTCAAGGGTAATTGTCTTCCCAGTGAGGGTTTTGACAAAAATCTGCAT 48805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396629219191030