Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq59516 154 4e-33 >seq59516 Length=1985 Score = 154 bits (170), Expect = 4e-33 Identities = 266/373 (71%), Gaps = 14/373 (4%) Strand=Plus/Minus Query 11006 ATGGCAGGGGAGACCGTGATCACGGTCGTGGGGAACCTCACTGCAGACCCTGAGCTGCGT 11065 |||||||| || || | ||||| ||| | || ||||| || | ||||| ||||| Sbjct 1296 ATGGCAGGCGAAACGATCATCACCGTCATCGGCAACCTGACCGACGACCCGGAGCTCAAG 1237 Query 11066 TACACGCAGAACGGGCTGCCG--GTGGCGAACTTCACCATCGCATCGACGCCGCGCACCT 11123 | ||| | ||||| |||| || || ||||||||| |||| |||||||| || ||| Sbjct 1236 TTCACTCCTT-CGGGC-GCCGCAGTTGCCAACTTCACCGTCGCGTCGACGCCTCGAACCC 1179 Query 11124 TCGACCGTCAGGCGAACGAGTGGAAGGACGGCGAAGCGCTGTTCCTCCG-TGCGTCCGTG 11182 |||| |||||| | |||||||||||||||||||| || |||||| | || |||| ||| Sbjct 1178 TCGATCGTCAGACCAACGAGTGGAAGGACGGCGAGGCTCTGTTCATTCGCTGCG-CCGCC 1120 Query 11183 TGGCGCGAGTTCGCGGAGCACGTGGCGGGTTCGCTGACCAAGGGCATGCGGGTCATCGCA 11242 |||||| || |||| ||| |||| || | |||||| ||||| || |||||||| Sbjct 1119 TGGCGCCAGCTCGCCGAGAACGTCGCCGAGTCGCTGCAGAAGGGTCAGCAGGTCATCG-- 1062 Query 11243 TCC--GGACGCCTGAAGCA-GCGCTCCTACCAGGACCGCGAGGGCAACAACCGCAC-CGC 11298 ||| || | ||| |||| ||| |||| || | || || | |||| || Sbjct 1061 TCCAGGGCCCGCTG-AGCATCCGCAACTACGAGCGTCAGGACGGATCGCGCGGCACGAGC 1003 Query 11299 GATCGAGCTCGAGGTGGACGAGATCGGCCCGAGCCTCCGCTACGCGACGGCGCAGGTCAC 11358 | ||||| | ||| |||||||||| ||| || |||| |||||| || ||||||| Sbjct 1002 G-TCGAGATGACGGTCAACGAGATCGGTCCGTCGCTGCGCTTCGCGACCGCCAAGGTCAC 944 Query 11359 CCGGGCCGCCCGC 11371 ||| ||| |||| Sbjct 943 CCGCGCCAACCGC 931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148088815466610