Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq341 129 1e-24 seq4448 87.8 4e-12 >seq341 Length=228855 Score = 129 bits (142), Expect = 1e-24 Identities = 571/885 (65%), Gaps = 33/885 (4%) Strand=Plus/Minus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| | || || |||||||| | || ||||| ||||| ||||| |||| ||| Sbjct 3351 TCTGCATGTTTCCAATTCAGTATCCCAAAATTTGGGAAATGTACAAGAAAGCAGAGGCCT 3292 Query 242927 CCTTTTGGACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAAC 242986 | |||||||| | || || || | || | || | ||||| || |||| Sbjct 3291 CGTTTTGGACGGCGGAAGAGGTCGATTTGTCCCAGGATATACAGCACTGG---GAAAAAC 3235 Query 242987 TCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATG 243046 | | ||| ||||| |||||||| || |||||||| | |||||||| | ||| || | Sbjct 3234 TGACTGAGGACGAGAAGCATTTCATTAAGCACATTCTTGCCTTTTTCGCCGCCTCAGACG 3175 Query 243047 GTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTC-CAGAGGC 243104 | || || |||| || || || | || || || | || | || | ||||| Sbjct 3174 GCATCGTTTTGGAGAACCTCGCTGG--AAGGTTCATGAAGGAGGTTCAAATCTCGGAGGC 3117 Query 243105 ACGGCAATTTTATGCTTACCAAAC----ATTCAACGAATCTATCCATTCTGAACAATATG 243160 || ||||||| | ||||| ||| | |||| ||||||||||| || Sbjct 3116 TCGTGCGTTTTATGGGTTCCAAATCGCGATTGA--GAAT--ATCCATTCTGAGATGTACA 3061 Query 243161 CTCTTCTTATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGC 243218 ||||||| | || | |||| ||| ||| | ||| || ||||||| |||| Sbjct 3060 GTCTTCTTCTTGAATC--TTATATCAAGGATTCGGAGGAGAAGAATAGGCTTTTCCACGC 3003 Query 243219 CATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACC 243278 ||||| | | |||| || | || ||||| || ||||| | ||| | || Sbjct 3002 AATCGAGACCGTTCCTTGTGTGGAGAAGAAGGCCAAGTGGGCCCTCCGCTGGATCGATGG 2943 Query 243279 CGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTC 243338 | | || |||||||||||| | |||||| | ||||||||||| ||| | || || Sbjct 2942 CTCAGAGTCCTTTGCTGAGCGTATACTCGCCTTCGCTTGCGTTGAAGGGATTTTCTTCTC 2883 Query 243339 CGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCT 243398 || || |||||||| || |||||||| ||| ||| | |||||||| | | | Sbjct 2882 GGGAAGCTTCTGCGCAATATTTTGGCTAAAGAAGCGAGGATTAATGCCTGGATTAACTTT 2823 Query 243399 GTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTT-ATGT 243457 || |||||||| ||| ||| || |||||| | ||| | || | | |||| | | Sbjct 2822 CTCGAACGAGTTGATCTCTCGAGATGAGGGCTTACACTGTGA-TTTTGCGTGCTTGCTCT 2764 Query 243458 ATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCA 243516 | ||| || || || | | | || ||||| || || | || || Sbjct 2763 ACAGCCTGCTGAGGATGAAACT-GAGTGAGGATCGAGTCAAGGGGATTATTGCTGATGCC 2705 Query 243517 GTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || |||| || | |||||| ||||||| || |||| || || |||| |||||| Sbjct 2704 GTAGAAATTGAGAGGGAATTTGTTTGCGAAGCCCTTCCTTGTGCCCTGGTTGGGATGAAC 2645 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 ||| || ||| | |||||||| ||||||||||| || || | || | | ||||| Sbjct 2644 GGTGATCTGATGAGTCAGTACATTGAATTCGTAGCTGATCGACTGTTGAATGAACTTGGG 2585 Query 243637 TATGAGAAAGTGTACAA-CTCCAAGAACCCCTTTGCCTTTATGGA---GCTCATTTCGCT 243692 || ||| | ||||| | ||| ||||| |||| | ||||| | ||| || | Sbjct 2584 TACAGCAAATTATACAATGTGCAA-AACCCATTTGATTGGATGGAATTGATCAGTT---T 2529 Query 243693 TCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || |||||||| || ||||| || ||| | || |||| || || Sbjct 2528 GCAGGGGAAAACGAATTTCTTTGAGAAGAGGGTTGGTGAATACCA 2484 >seq4448 Length=115515 Score = 87.8 bits (96), Expect = 4e-12 Identities = 124/173 (72%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 30968 AAGGCCCACGAATGTTCCTTGCGAATTGCTTCTTCTTCCTC-GGGTGTGATCTCGTTTTC 31026 || ||||| | || |||| |||||| | | ||||| ||||| ||| |||| || || | Sbjct 60088 AATGCCCAAGCATTTTCCCTGCGAACTTCCTCTTCCTCCTCCGGGGGTGAAGTCATTCTT 60029 Query 31027 GATACCGAACACTTTTCGAATCTCTTCCGGAGtttttccttttattttttCAGCGATAGC 31086 ||| ||| || || || || |||||||| ||||||||||| | || || | || Sbjct 60028 AATATTGAAAGTCTTGCGGATTTCCTCCGGAGTCTTTCCTTTTATCATGTCGGCCACAGT 59969 Query 31087 TTGACATAGAACATCAAGCATACTCTTTATGTTCAAGAAATTCGCTCCTTGAA 31139 |||||| | ||| |||| |||||||||||||| | || ||| | |||| Sbjct 59968 CTGACATGTGAGATCGAGCAGACTCTTTATGTTCAGATAGTTTGCTGCCTGAA 59916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101615094865250