Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq341 114 2e-20 seq83971 102 1e-16 seq4336 93.3 5e-14 seq1602 93.3 5e-14 seq6003 86.0 7e-12 >seq341 Length=228855 Score = 114 bits (126), Expect = 2e-20 Identities = 352/532 (66%), Gaps = 23/532 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || ||||||| |||||| ||||| || || ||||| | ||| ||||| ||||| Sbjct 2486 GTATTCACCAACCCTCTTCTCAAAGAAATTCGTTTTCCCCTGCAAACTGATCAATTCCAT 2545 Query 125818 AAAATCAAATGGGTTCTTTG---AGT-TCCAAATTGTTGGCACCCCAATCTGTTTGAGGA 125873 ||||||||||||| ||| | | | || ||| || ||||| | || | | Sbjct 2546 CCAATCAAATGGGTT--TTGCACATTGTATAATTTGCTGTA--CCCAAGTTCATTCAACA 2601 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933 | ||||| | ||| | |||||||||| | |||| ||| |||||| || | ||| Sbjct 2602 GTCGATCAGCTACGAATTCAATGTACTGACTCATCAGATCACCGTTCATCCCAACCAGGG 2661 Query 125934 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG 125993 ||| || || || || | | || || |||||||||| ||||| || | || Sbjct 2662 CACAAGGAAGGGCTTCGCAAACAAATTCCCTCTCAATTTCTACGGCATCAGCAATAATCC 2721 Query 125994 CGT-GAATGGTGTCCACCCCAGGTCTATTGCGCAA-AGTCTTGAAGAGTTC-CACGGCAA 126050 | | || | | ||| | | || | | | || || || | |||| |||| ||| Sbjct 2722 CCTTGACTCGA-TCCTCACTCAGTTTCATCCTCAGCAGGCT-GTAGAGCAAGCACG-CAA 2778 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || ||| | ||||| || || ||||| | || |||||||| | ||| |||| Sbjct 2779 AATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTTAATCCAGGCA 2838 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 | | || |||||||| | ||| || || || || || ||||||||||| || || | Sbjct 2839 TTAATCCTCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCCGAGAAGAAAATCCCTT 2898 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTG---TCAAACC 126227 | || || ||||| || | | ||||||||||||| |||| || | || | || Sbjct 2899 CAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAG------GACTCTGAGCCATCGATCC 2952 Query 126228 ACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 | | ||||||| ||||| ||||| | ||| || ||||||| ||| || Sbjct 2953 AGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGC 3004 >seq83971 Length=1406 Score = 102 bits (112), Expect = 1e-16 Identities = 193/278 (69%), Gaps = 7/278 (3%) Strand=Plus/Plus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGC 10936 || |||||||| ||||||||||| ||||| ||||| || || | ||||||||| | | Sbjct 584 AACCCATCCATTTCAGTCAAGAGCTGATTAATGGTCTGCTCTCTCTCATCATTCCC--AC 641 Query 10937 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 | | | ||||| | | |||| | || || || ||||| ||||| ||||| || || | Sbjct 642 CTCCAAGTCCCGCCCCTCTTTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATGC 701 Query 10995 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 | || || ||| || ||| |||||| | ||| | ||||| || || |||||| Sbjct 702 AAGG-TGCTTTCGACTTGGCCTTTTCAAACAAATC-CTCACTCTTGAAGCTCCCACACCC 759 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 11113 || |||| ||||||||| | | ||| | ||| | ||| || || || ||||| Sbjct 760 ACGAACAATTCCACAAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGCCTCACCG 819 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || | || | ||| | ||||| ||||| || ||||| Sbjct 820 GCAACTGCCCTGGCCAAAAGGGTTTTCCCAGTACCAGG 857 >seq4336 Length=101003 Score = 93.3 bits (102), Expect = 5e-14 Identities = 190/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGC 10936 || |||||||| ||||||||||| |||||||| || || || | ||||||||| | | Sbjct 652 AACCCATCCATTTCAGTCAAGAGCTGATTGATAGTCTGCTCTCTTTCATCATTACC--AC 595 Query 10937 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 | | | || || | | ||| | || || || ||||| ||||| ||||| || || | Sbjct 594 CTCCAAGTCCTGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAACACAATGC 535 Query 10995 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 | || | |||| || || ||||| | ||||| ||||| || || || ||| Sbjct 534 AAGG-CGCTTTTGACTTTGCCTTCTCAAACAAATCTCTCACTCTTGAAGCTCCCACGCCC 476 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 11113 ||||||| ||||||||| | | ||| | ||| | ||| || || || ||||| Sbjct 475 ACAAACAATTCCACAAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGCCTCACCG 416 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || | || | ||| | ||||| ||||| || ||||| Sbjct 415 GCAACTGCCCTGGCCAAAAGGGTTTTCCCAGTACCAGG 378 >seq1602 Length=196056 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCGGTGG 113999 ||||||||||| || |||||||||||||||||||| || |||||| || ||| ||| | Sbjct 113413 ATAGATATTGGAGGTATATGGCTCAAAGCACTCATTATT-CCCAAGAATCTGGCTGGTTG 113471 Query 114000 AGGCTGTGGGCATGGGTGCCATGAGAAG 114027 |||| |||||||||||||| || ||||| Sbjct 113472 AGGCAGTGGGCATGGGTGCTATAAGAAG 113499 >seq6003 Length=93342 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 ||||||||||| || || ||||||||||||||||| || |||| || ||| ||| || Sbjct 78806 ATAGATATTGGAAGTATAAGGCTCAAAGCACTCATTATTCCCCAGAATCTGGCTGGTCGA 78865 Query 114001 GGCTGTGGGCATGGGTGCCATGAGAAG 114027 ||||||||||| ||||| || ||||| Sbjct 78866 AGCTGTGGGCATAGGTGCTATAAGAAG 78892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596685198656200