Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq62369 170 9e-38 seq86170 109 3e-19 seq59516 95.1 6e-15 >seq62369 Length=566 Score = 170 bits (188), Expect = 9e-38 Identities = 234/327 (72%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 65934 CTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGT 65993 || ||| ||| ||||||||||| || ||| | ||||| || || |||||||||||| Sbjct 327 CTCGACATCGCGCTCGGCATCGGCGGACTGCCGCGCGGCCGTGTCGTCGAGATCTACGGT 268 Query 65994 CCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCC 66053 || ||||| || || ||| | || | ||| |||||||||||||| |||||| ||| Sbjct 267 CCGGAGTCGTCGGGTAAGACGACCGTCGCCCTGCACGCGGTGGCCAACGCCCAGCGCGCC 208 Query 66054 GGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCG 66113 ||||| ||| |||| |||||||||||| || | |||||||| || |||||| | Sbjct 207 GGTGGTGTCGCGGCCTTCATCGACGCCGAGCACGCGCTCGACCCCGACTACGCCCGCAAG 148 Query 66114 CTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTG 66173 ||||| || || |||| || || | |||||| |||| || |||||||| || Sbjct 147 CTCGGCGTCGACACCGACGCCCTGCTGATCTCGCAGCCCGACAGCGGTGAGCAGGCTCTC 88 Query 66174 GAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTG 66233 ||||||| ||| | || || || |||| | ||||||||| | ||||| || Sbjct 87 GAGATCGCCGACATGCTGATCCGCTCCGGCGCCCTCGACATCATCGTCATCGACTCCGTC 28 Query 66234 GCGGCCCTGGTGCCGCGGGCGGAGCTC 66260 ||||| || ||||| || || ||| || Sbjct 27 GCGGCGCTCGTGCCCCGCGCCGAGATC 1 >seq86170 Length=626 Score = 109 bits (120), Expect = 3e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 66510 GTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAG 66569 |||||||||||||| ||||| ||||| |||||||||||||| || || ||| | ||| Sbjct 601 GTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGCTCGCCCCGCCGTTCAAGCAG 542 Query 66570 GCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATG 66629 || ||||| |||| | |||||| ||||||| |||||||| || ||||| | Sbjct 541 GCCGAGTTCGACATCATGTACGGCCAGGGCATCAGCCGCGAGGGCAGCCTGATCGACGTC 482 Query 66630 GCCGTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAAC 66689 | ||| | || || || ||| | || ||||||| || ||||| | | | | Sbjct 481 GGCGTCGACATCGGTCTGGTCCGCAAGGCCGGCGCCTGGTACACGTACGACGGCGACCAG 422 Query 66690 ATCGGCCAGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGCCG 66747 | || ||||||||| ||| | ||||| || ||||||||||| ||| | |||| Sbjct 421 CTGGGTCAGGGCAAGGAGAAGTCGCGGCAGTTCCTCAAGGACAACCCCGACCTGGCCG 364 >seq59516 Length=1985 Score = 95.1 bits (104), Expect = 6e-15 Identities = 215/314 (68%), Gaps = 17/314 (5%) Strand=Plus/Minus Query 59301 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTC 59359 || |||||| |||||||| |||||| ||||| |||||| || | | || | | || Sbjct 1271 TCATCGGCAACCTGACCGACGACCCGGAGCTCAAGTTCACTCCTTCGGGCGCCG-CAGTT 1213 Query 59360 GCCAACTTCACCGTCGTGTCCAA----CGAACGCCGCCGCGACGCCCAGGGCAAC---TG 59412 |||||||||||||||| ||| | ||||| || ||| ||| |||| || Sbjct 1212 GCCAACTTCACCGTCGCGTCGACGCCTCGAAC----CCTCGATCGTCAGACCAACGAGTG 1157 Query 59413 GGTCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGT 59472 | |||||||| || ||| | |||||| || ||||||| | |||||||||||| Sbjct 1156 GAAGGACGGCGAGGCTCTGTTCATTCGCTGCGCCGCCTGGCGCCAGCTCGCCGAGAACGT 1097 Query 59473 AGCGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCA-GCGCT 59531 || || || ||||| || |||| |||||||| || ||| || |||| ||| Sbjct 1096 CGCCGAGTCGCTGCAGAAGGGTCAGCAGGTCATCGTCCAGGGCCCGCT-GAGCATCCGCA 1038 Query 59532 CCTTCGAGACCAAGGAAGGCGACAAGC-GCACCGTCATCGAGGTGGAGGTAGACGAGATC 59590 || |||| |||| || | || |||| | ||||| || ||| |||||||| Sbjct 1037 ACTACGAGCGTCAGGACGG-ATCGCGCGGCACGAGCGTCGAGATGACGGTCAACGAGATC 979 Query 59591 GGCCCGTCGCTGCG 59604 || ||||||||||| Sbjct 978 GGTCCGTCGCTGCG 965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242205873507380