Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq83971 100 3e-16 seq4336 89.7 6e-13 seq1602 89.7 6e-13 >seq83971 Length=1406 Score = 100 bits (110), Expect = 3e-16 Identities = 193/279 (69%), Gaps = 7/279 (3%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| |||||||| ||||||||||| ||||| ||||| || || | ||||||||| | Sbjct 583 GAACCCATCCATTTCAGTCAAGAGCTGATTAATGGTCTGCTCTCTCTCATCATTCCC--A 640 Query 12851 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | | | | ||||| | | |||| | || || || ||||| || |||||||| || || Sbjct 641 CCTCCAAGTCCCGCCCCTCTTTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATG 700 Query 12909 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 || || || ||| || ||| |||||| | ||| | |||||| || || ||||| Sbjct 701 CAAGG-TGCTTTCGACTTGGCCTTTTCAAACAAATC-CTCACTCTTGAAGCTCCCACACC 758 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 13027 ||| |||| |||||||| | | ||| | ||| | ||| || || || ||||| Sbjct 759 CACGAACAATTCCACAAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGCCTCACC 818 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | || | ||| | ||||| ||||| || || || Sbjct 819 GGCAACTGCCCTGGCCAAAAGGGTTTTCCCAGTACCAGG 857 >seq4336 Length=101003 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| |||||||| ||||||||||| |||||||| || || || | ||||||||| | Sbjct 653 GAACCCATCCATTTCAGTCAAGAGCTGATTGATAGTCTGCTCTCTTTCATCATTACC--A 596 Query 12851 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | | | | || || | | ||| | || || || ||||| || |||||||| || || Sbjct 595 CCTCCAAGTCCTGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAACACAATG 536 Query 12909 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 || || | |||| || || ||||| | ||||| |||||| || || || || Sbjct 535 CAAGG-CGCTTTTGACTTTGCCTTCTCAAACAAATCTCTCACTCTTGAAGCTCCCACGCC 477 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 13027 |||||||| |||||||| | | ||| | ||| | ||| || || || ||||| Sbjct 476 CACAAACAATTCCACAAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGCCTCACC 417 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | || | ||| | ||||| ||||| || || || Sbjct 416 GGCAACTGCCCTGGCCAAAAGGGTTTTCCCAGTACCAGG 378 >seq1602 Length=196056 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGG 115960 |||||| |||| || |||||||||||||||||||| || ||||||| | |||| || | Sbjct 113413 ATAGATATTGGAGGTATATGGCTCAAAGCACTCATTATT-CCCAAGAATCTGGCTGGTTG 113471 Query 115961 AGGCTGTGGGCATGGGTGCCATGAGAAG 115988 |||| |||||||||||||| || ||||| Sbjct 113472 AGGCAGTGGGCATGGGTGCTATAAGAAG 113499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612820723787400