Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq7954 87.8 1e-12 seq646 84.2 2e-11 seq203 82.4 5e-11 >seq7954 Length=38498 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 39517 TGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGT 39576 |||| |||| || || || || || ||||| || | | | | |||| || | ||| Sbjct 9926 TGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGCGAGAGTCCTTCCATCCTCAAGTTGC 9985 Query 39577 TTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTT 39636 ||||| |||| || || | |||||| |||| || | ||| || ||||| ||| ||| Sbjct 9986 TTCCCAGCAAATATCAACCTCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGTATCTTT 10045 Query 39637 TG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCG 39694 |||| || |||| | |||||| | ||| ||||| || || || || ||||| || | Sbjct 10046 GCCTTTACATTGTCGAT--TGTGTCAGAGCTCTCCACCTCTAAGGTGATGGTTTTTCCAG 10103 Query 39695 TTAAAGTTTTTACGAAGATCTGCATG 39720 ||| || || || |||||||||||| Sbjct 10104 TTAGGGTCTTCACAAAGATCTGCATG 10129 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || ||||| |||| ||| || ||||| ||||| |||||||| Sbjct 10357 GCCACCACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAATCGGC 10416 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | | |||| || | |||||| || ||||||| | | || || |||| || Sbjct 10417 CAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATGAGTCTTTGTTGGTCCGGTGG 10476 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| || ||||| || || || | | | | |||||| | || ||||| Sbjct 10477 GATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTATCAATTGTGTCGGAACTCTCCAC 10536 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| ||||| ||||| | || || || || || ||||| Sbjct 10537 CTCCAAAGTAATGGTTTTTCCCGTCAGGGTCTTGACAAAAATTTGCAT 10584 >seq646 Length=154290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 ||||| || | |||| || || || || || ||||| |||||| || |||| || Sbjct 48825 ACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTACGGCCATCCTCA 48884 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 | ||||| || | || || | | ||| || |||| || | |||||| ||||| | Sbjct 48885 AGCTGTTTACCAGCGAAGATAAGCCTCTGTTGGTCCGGTGGGATGCCTTCCTTGTCTTGT 48944 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || || ||||| | | | ||||| | ||| ||||| ||||||||||| ||||| Sbjct 48945 ATCTTGGCTTTAACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATGGTTTTC 49004 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || ||||| |||||||| Sbjct 49005 CCGGTAAGGGTCTTGACGAAAATCTGCAT 49033 >seq203 Length=254899 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| ||||| ||||| ||||| || | | | | || || | ||||||||| |||| Sbjct 79762 TTCCTTTTGGATATTGTAATCAGCAAGAGTCCTCCCGTCCTCGAGCTGTTTCCCGGCAAA 79821 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || || | |||||| || | || | ||||| || || ||||| |||| | Sbjct 79822 GATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTAACATT 79881 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | |||||||| ||||| || ||||||||||| ||||| || || || || || || Sbjct 79882 ATCGATTGTGTCTGAACTTTCAACTTCCAAAGTAATAGTTTTCCCTGTCAATGTCTTGAC 79941 Query 39708 GAAGATCTGCATG 39720 ||| || |||||| Sbjct 79942 GAAAATTTGCATG 79954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346990632249995