Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq341 129 7e-25 seq1271 122 1e-22 seq506 113 6e-20 seq83971 104 3e-17 seq4336 93.3 5e-14 >seq341 Length=228855 Score = 129 bits (142), Expect = 7e-25 Identities = 523/813 (64%), Gaps = 21/813 (3%) Strand=Plus/Minus Query 101816 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGA 101875 |||||| || |||||||| ||| | || ||||| | | | ||| | | || | ||| Sbjct 3287 TTGGACGGCGGAAGAGGTCGATTTGTCCCAGGATATACAGCACTGGGAAAAACTGACTGA 3228 Query 101876 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGT 101935 | || ||| | ||||| || |||| || || || || || | || || || || || Sbjct 3227 GGACGAGAAGCATTTCATTAAGCACATTCTTGCCTTTTTCGCCGCCTCAGACGGCATCGT 3168 Query 101936 TTTTGAGAATATCAATAACAACTTTGCTGATG-AGGTGCAATCCTCTGAAGCGAGATCTT 101994 ||| ||||| || | || || ||| | |||| ||| ||| || || | | | Sbjct 3167 TTTGGAGAACCTCGCTGG-AAGGTTCATGAAGGAGGTTCAAATCTCGGAGGCTCGTGCGT 3109 Query 101995 TCTATGCGTATCAATGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAG 102054 | |||| || ||| | ||| | | ||| |||| |||||| || | | Sbjct 3108 TTTATGGGTTCCAAATCGCGATTGAGAATATCCATTCTGAGATGTACAGTCTTCTTCTTG 3049 Query 102055 ACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTC 102114 | ||||| |||||| | |||||||| ||| || | || ||| | || |||| Sbjct 3048 AATCTTATATCAAGGATTCGGAGGAGAAGAATAGGCTTTTCCACGCAATCGAGACCGTTC 2989 Query 102115 CATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTT 102171 | ||| | | ||||| || | ||||| | ||| | ||| || |||| Sbjct 2988 CTTGTGTGGAGAAGAAGGCCAAGTGGGCCCTCCGCTGGATCGATGGCTCAGAGTC----- 2934 Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||||||||||| | |||| || || || ||||| || || |||||||| || || Sbjct 2933 -CTTTGCTGAGCGTATACTCGCCTTCGCTTGCGTTGAAGGGATTTTCTTCTCGGGAAGCT 2875 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||||| || | |||||| ||||||||||| | ||||| || | ||||| |||| Sbjct 2874 TCTGCGCAATATTTTGGCTAAAGAAGCGAGGATTAATGCCTGGATTAACTTTCTCGAACG 2815 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTAT 102351 || | |||||||| || ||||| | ||| || |||||| || | || | Sbjct 2814 AGTTGATCTCTCGAGATGAGGGCTTACACTGTGATTTTGCGTGCTTGCTCTACAGCCTGC 2755 Query 102352 TGCGTATTAAACCAACGACTGAG--ACTATTC-ATTCTATTGTTAAGGAAGCCGTTGAGA 102408 || | || |||| || |||| | | || | ||| || || ||||| || | Sbjct 2754 TGAGGATGAAAC---TGAGTGAGGATCGAGTCAAGGGGATTATTGCTGATGCCGTAGAAA 2698 Query 102409 TTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAA 102468 |||||| || ||| | | || |||||||| || || || | || ||||| ||| Sbjct 2697 TTGAGAGGGAATTTGTTTGCGAAGCCCTTCCTTGTGCCCTGGTTGGGATGAACGGTGATC 2638 Query 102469 AGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTC 102528 |||| | || ||||| | ||| ||||| || ||||||| | | |||| | | Sbjct 2637 TGATGAGTCAGTACATTGAATTCGTAGCTGATCGACTGTTGAATGA-ACTTGGGTACAGC 2579 Query 102529 CAATT-TGGAA-CTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAA 102586 |||| | || | ||| || |||||||| | ||||| || || | | ||||| Sbjct 2578 AAATTATACAATGTGCAA-AACCCATTTGATTGGATGGAATTGATCAGTTTGCAGGGGAA 2520 Query 102587 GACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 102619 || || ||||| || ||||||||||| || || Sbjct 2519 AACGAATTTCTTTGAGAAGAGGGTTGGTGAATA 2487 >seq1271 Length=174858 Score = 122 bits (134), Expect = 1e-22 Identities = 238/342 (70%), Gaps = 21/342 (6%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT-TTCGTTATCAAA 15976 ||||| |||||| | || || ||||| || || |||| |||||| || ||| | ||||| Sbjct 167742 TCAAGAATATCAGCACGGTTAGTTGCCGCAATTACAATAATACCAGTGTTCCCT-TCAAA 167800 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| || ||| |||||||||| | ||| ||||||| ||||||||| | Sbjct 167801 ACCATCCATTTCCGTC-AAAGCTGGTTCAGAGTCTGTTCCCTTTCATCATTTCC------ 167853 Query 16037 ACCACCAGCACTGCGTTGCTTT-------CCCACGGCATCAATCTCATCAATGAAGACGA 16089 ||||||| | |||| || | || || |||||||| ||||| | || || | Sbjct 167854 ACCACCAATTC-CCGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCGACAAATACAA 167912 Query 16090 TGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 |||| || ||| | | | | ||| ||| ||||| || || || ||| || ||| Sbjct 167913 TGCAGGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGGACTCGTGAGGCACCAACA 167971 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 |||||||||||||| ||||| | | | | | |||| || || || ||| || ||| Sbjct 167972 CCAACAAACATCTCAACAAACTCCGAACCTG-ATATTGAGAAAAATGGAACACCAGCTTC 168030 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || ||||| || ||| || | |||| || |||||||| Sbjct 168031 CCCAGCAATTGCCTTGGCTAGCAACATCTTTCCAGTACCTGG 168072 >seq506 Length=181222 Score = 113 bits (124), Expect = 6e-20 Identities = 234/340 (69%), Gaps = 14/340 (4%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCA 15974 |||||| ||||| | || || ||||| || || || | ||||| |||||| || || Sbjct 64211 ATCAAGAATATCTGCACGGTTAGTTGCTGCAATTACTATTATACCAGTGTTTCCTT--CA 64154 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| ||||| |||||||| || | || ||||||||||||||||| || Sbjct 64153 AATCCATCCATTTCTGTTAAAAGCTGATTCAGCGTCTGTTCCCGTTCATCATTTCCT--- 64097 Query 16035 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 |||| || | | | ||| || || |||||||| ||||| | || || ||| Sbjct 64096 CCACCAATTCCTGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCGACAAATACAATG 64037 Query 16092 CATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 || || ||| || || ||| ||| ||||| || || || || || ||||| Sbjct 64036 CAGGGAGCATTCTCCTTGGCTTTCTTGAAA-AGATCACGGACTCGTGATGCACCAACACC 63978 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 |||||||||||| ||||| | | | ||| |||| || || || || | ||||| Sbjct 63977 AACAAACATCTCAACAAATTCAGAACCCGAA-ATTGAGAAAAATGGAACTCCTGCTTCAC 63919 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | ||||| || ||| || | || ||||| |||||||| Sbjct 63918 CAGCAATTGCCTTGGCTAGCAAGGTTTTACCAGTACCTGG 63879 >seq83971 Length=1406 Score = 104 bits (114), Expect = 3e-17 Identities = 222/324 (69%), Gaps = 21/324 (6%) Strand=Plus/Plus Query 15936 TTCGTTGCGGCGATGACAACAATACCTG--TTTCGTTATCAAAACCATCCATCTCTGTCA 15993 || ||||| || | ||| | || ||||| || | | | || |||||||| || |||| Sbjct 545 TTTGTTGCAGCCAAGACTATAACACCTGAATTCCCTGAG--AACCCATCCATTTCAGTCA 602 Query 15994 AAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCG 16051 | ||||| ||||| || || || | ||||||||| | | | | | || || | | Sbjct 603 AGAGCTGATTAATGGTCTGCTCTCTCTCATCATTCCCA--CCTCCAAGTCCCGCCCCTCT 660 Query 16052 TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGA-- 16109 |||| | ||||| |||||||||||||||||||| || ||||| || || ||| ||| Sbjct 661 TTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATGCAAGG-TGCTTT---CGACT 716 Query 16110 --GCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCAC 16165 || |||||| | |||| ||| |||| || |||||||| || |||| ||||| Sbjct 717 TGGCCTTTTCAAACAAATCC---TCACTCTTGAAGCTCCCACACCCACGAACAATTCCAC 773 Query 16166 AAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGC 16225 ||| | || ||| | ||| | ||| || || | ||||| |||| || | ||| Sbjct 774 AAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGCCTCACCGGCAACTGCCCTGGC 833 Query 16226 GAGAAGAGTCTTACCCGTACCTGG 16249 | ||| || || || ||||| || Sbjct 834 CAAAAGGGTTTTCCCAGTACCAGG 857 >seq4336 Length=101003 Score = 93.3 bits (102), Expect = 5e-14 Identities = 231/345 (67%), Gaps = 22/345 (6%) Strand=Plus/Minus Query 15916 CATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTG--TTTCGTTATC 15973 ||||||| | ||| ||| || ||||| || | || | || ||||| || | | | Sbjct 711 CATCAAGAACATCTGGGCGGTTAGTTGCTGCCAACACTATAACACCTGAATTCCCTGAG- 653 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 || |||||||| || ||||| ||||| || ||||| || || | ||||||||| | Sbjct 652 -AACCCATCCATTTCAGTCAAGAGCTGATTGATAGTCTGCTCTCTTTCATCATTACCA-- 596 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | ||| | || || |||||||||||||||||||| || ||| Sbjct 595 CCTCCAAGTCCTGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAACACAATG 536 Query 16092 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCC 16144 || || |||| ||| || ||||| | ||| | ||| |||| || || Sbjct 535 CAAGGCGCTTTTGACTTT-----GCCTTCTCAAACAAATCTC--TCACTCTTGAAGCTCC 483 Query 16145 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 16204 ||| || ||||||| |||||||| | || ||| | ||| | ||| || || | Sbjct 482 CACGCCCACAAACAATTCCACAAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGC 423 Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| |||| || | ||| | ||| || || || ||||| || Sbjct 422 CTCACCGGCAACTGCCCTGGCCAAAAGGGTTTTCCCAGTACCAGG 378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620047828050800