Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq341 159 4e-34 seq3095 120 4e-22 seq506 104 3e-17 >seq341 Length=228855 Score = 159 bits (176), Expect = 4e-34 Identities = 371/549 (68%), Gaps = 9/549 (2%) Strand=Plus/Plus Query 119510 AAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCT 119569 ||||||| |||| |||||||| | ||| || ||| | ||||||||| | ||||| Sbjct 2790 AAGCCCT-CATCTCGAGAGATCAACTCGTTCGAGAAAGTTAATCCAGGCATTAATCCTCG 2848 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 |||||||||||||| || || || || ||||| || ||||| || || || || || || Sbjct 2849 CTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCCGAGAAGAAAATCCCTTCAACGCAAGC 2908 Query 119630 GAAAGCGAATAGACGCTCAGCAAAAG-GTC-GAGACTTGTCGAACCACTTGAGAGCCCAG 119687 ||| |||| || |||||||||||| | || ||| | |||| ||| ||| ||||| Sbjct 2909 GAAGGCGAGTATACGCTCAGCAAAGGACTCTGAGCC--ATCGATCCAGCGGAGGGCCCAC 2966 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCA 119747 |||||||| ||| | || || || || | ||| || | |||||| ||||| || Sbjct 2967 TTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGCGTGGAAAAGCCTATTCTTCTCC 3026 Query 119748 GCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCA 119807 | |||||| ||||| |||| || | ||| ||||| ||| | | ||| Sbjct 3027 TCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGTACATCTCAGAATGGATATTCTCA 3086 Query 119808 TTGTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCA-CTTCGTCAGCAA 119865 | | || || | ||||||| | ||||| || || ||||| | || | ||| || Sbjct 3087 AT-CGCGATTTGGAACCCATAAAACGCACGAGCCTCCGAGATTTGAACCTCCTTCATGAA 3145 Query 119866 AATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGT 119925 || | || || || ||||| || || || || | ||||| || || | |||| Sbjct 3146 CCTTCCAG-CGAGGTTCTCCAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGAATGT 3204 Query 119926 ACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACA 119985 ||| ||||| | || || | || | ||| ||| ||||| | ||||| | |||| Sbjct 3205 GCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCAGTGCTGTATATCCTGGGACA 3264 Query 119986 AGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCAAAGTT 120045 | || |||||||| || ||||| || || ||| || || || | |||||||| || Sbjct 3265 AATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTTCTTGTACATTTCCCAAATTT 3324 Query 120046 CAGGATACT 120054 ||||||| Sbjct 3325 TGGGATACT 3333 >seq3095 Length=123113 Score = 120 bits (132), Expect = 4e-22 Identities = 358/545 (66%), Gaps = 12/545 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT----CCAGGCATGAGTCCTCT 119569 || ||||| || ||||| | ||| || |||| ||||| |||||||| | ||| | Sbjct 111564 CCCTCATCTCGCGAGATTAACTCGTT--TGAA--AAAGTTAATCCAGGCATTAATCCACG 111509 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 || ||||||||||| || || || || ||||| || ||||| || || || || || || Sbjct 111508 CTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAAATCCCTTCGACGCAAGC 111449 Query 119630 GAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGTT 119689 || |||| || |||||||| || | | || ||| | ||| ||| ||||| || Sbjct 111448 AAAGGCGAGTATGCGCTCAGCGAAGGATTCTGAGCCGTCAATCCAGCGGAGGGCCCACTT 111389 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGC 119749 |||||| | | | || || || || | ||| || | |||||| | ||||| || | Sbjct 111388 GGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGAAAAGCCGATTCTTCTCCTC 111329 Query 119750 ACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCATT 119809 |||||| ||||| |||| || | ||| |||| ||| | | ||| | Sbjct 111328 CGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACATCTCGGAATGGATATTCTCAAT 111269 Query 119810 GTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTC-GTCAGCAAAA 119867 | || ||| | ||||||| | || || || || ||||| || || ||| || Sbjct 111268 -CGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGATTTGAACCTCTTTCATGAACC 111210 Query 119868 TTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTAC 119927 | | | | ||| || |||||||| || ||||| | || || || || | | | | Sbjct 111209 TCCCAGCT-AGATTCTCCAAAACAATGCCGTCGGAGGCGGCAAAAAAGGCAAGAACATGC 111151 Query 119928 TTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACAAG 119987 || ||||| | || |||| ||| | | | | | ||||| | | ||| | ||||| Sbjct 111150 TTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTGCTGTACATCCTGGGACAAA 111091 Query 119988 TCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCAAAGTTCA 120047 || |||||||| || ||||| || || |||||| || || | |||||||| || Sbjct 111090 TCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTTGTACATTTCCCAAATTTGG 111031 Query 120048 GGATA 120052 ||||| Sbjct 111030 GGATA 111026 >seq506 Length=181222 Score = 104 bits (114), Expect = 3e-17 Identities = 282/425 (66%), Gaps = 14/425 (3%) Strand=Plus/Minus Query 11535 ATCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAA 11594 |||||||||||| ||||||| || || ||||| |||| || ||||| | || || Sbjct 64211 ATCAAGAATATCTGCACGGTTAGTTGCTGCAATTACTATTATACCAGTGTTTCCTTCAAA 64152 Query 11595 ACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCAT 11654 || ||||||||||| | |||||| || | ||||||||| || ||||| || | | Sbjct 64151 TCCATCCATTTCTGTTAAAAGCTGATTCAGCGTCTGTTCCCGTTCATCATT-----TCCT 64097 Query 11655 --ACCACCTGCCGAACGCTTCTTA---CCGACAGCGTCAATCTCATCGATGAATACGATA 11709 |||| | | | | | | | || ||||| ||||| ||||||| ||||| || Sbjct 64096 CCACCAATTCCTGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCGACAAATACAATG 64037 Query 11710 CACGGTTGGTTGGCACGTGCCTGT-TCGAAAAGTTCACGTACACGCTTCGCTCCAACACC 11768 || || || | | || || | | |||||| ||||| || || || |||||||| Sbjct 64036 CAGGGAGCATTCTC-CTTGGCTTTCTTGAAAAGATCACGGACTCGTGATGCACCAACACC 63978 Query 11769 TACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCAC 11827 || ||||||||||| || | | | ||| | ||| | || ||||| | |||| Sbjct 63977 AACAAACATCTCAACAAATTCAGAACCCGAA-ATTGAGAAAAATGGAACTCCTGCTTCAC 63919 Query 11828 CAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGC 11887 |||| || || || || | || ||||| ||||| || | |||| ||||| | | Sbjct 63918 CAGCAATTGCCTTGGCTAGCAAGGTTTTACCAGTACCTGGAGGACCAATAAGAAGAACTC 63859 Query 11888 CACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAA 11947 | || || |||||| | | | | ||||||||| || ||||| ||||||| Sbjct 63858 CCTTAGGAATACGAGCACCAACTGCGGTAAACCTCTCAGGCTTTTTCAGGAACTCCACAA 63799 Query 11948 TCTCC 11952 |||| Sbjct 63798 CCTCC 63794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588316972667000