Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1271 118 1e-21 seq83971 102 1e-16 seq3095 102 1e-16 seq4336 89.7 6e-13 >seq1271 Length=174858 Score = 118 bits (130), Expect = 1e-21 Identities = 235/341 (69%), Gaps = 19/341 (6%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9283 ||||| |||||| | || || || || || || |||| |||||| || ||| | ||||| Sbjct 167742 TCAAGAATATCAGCACGGTTAGTTGCCGCAATTACAATAATACCAGTGTTCCCT-TCAAA 167800 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| || ||| |||| ||||| | ||| ||||||| ||||||||| | Sbjct 167801 ACCATCCATTTCCGTC-AAAGCTGGTTCAGAGTCTGTTCCCTTTCATCATTTCC------ 167853 Query 9344 ACCACCAGCACTGCGTTGCTTT-------CCCACGGCATCAATCTCATCAATGAAGACAA 9396 ||||||| | |||| || | || || |||||||| ||||| | || |||| Sbjct 167854 ACCACCAATTC-CCGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCGACAAATACAA 167912 Query 9397 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 | || || ||| || ||| | | || ||||| || || | | ||| || |||| Sbjct 167913 TGCAGGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCACGGACTCGTGAGGCACCAACAC 167972 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 9515 ||||||||||||| ||||| | | | | | |||| || || || ||| || ||| Sbjct 167973 CAACAAACATCTCAACAAACTCCGAACCTG-ATATTGAGAAAAATGGAACACCAGCTTCC 168031 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || ||||| || ||| || | |||| || |||||||| Sbjct 168032 CCAGCAATTGCCTTGGCTAGCAACATCTTTCCAGTACCTGG 168072 >seq83971 Length=1406 Score = 102 bits (112), Expect = 1e-16 Identities = 193/278 (69%), Gaps = 7/278 (3%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || ||||| || || ||||| || || || | ||||||||| | | Sbjct 584 AACCCATCCATTTCAGTCAAGAGCTGATTAATGGTCTGCTCTCTCTCATCATTCCCA--C 641 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | || || | | |||| | ||||| |||||||||||||||||||| ||||| | Sbjct 642 CTCCAAGTCCCGCCCCTCTTTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATGC 701 Query 9400 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 | || || ||| | ||| ||||||| | ||| | || ||| || |||||||| Sbjct 702 AAGG-TGCTTTCGACTTGGCCTTTTCAAACAAATC-CTCACTCTTGAAGCTCCCACACCC 759 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9518 || |||| |||||||| | || ||| | ||| | ||| || || | ||||| Sbjct 760 ACGAACAATTCCACAAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGCCTCACCG 819 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| || | ||| | ||| || || || ||||| || Sbjct 820 GCAACTGCCCTGGCCAAAAGGGTTTTCCCAGTACCAGG 857 >seq3095 Length=123113 Score = 102 bits (112), Expect = 1e-16 Identities = 342/524 (65%), Gaps = 19/524 (4%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | |||||||||||| || || | || ||||| || || || Sbjct 111582 GCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAATCCA 111523 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | || ||||| || | |||| | || |||||||| || |||||||| || Sbjct 111522 GGCATTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAAATC 111463 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA--GCGAGACTTTGTGTCAA 117451 || || || || ||||| || | | |||||| |||||||| ||| | ||||| Sbjct 111462 CCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGATTCTGAGCC-----GTCAA 111408 Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 117511 ||| | ||||| || ||||||||| ||| ||| || || || | ||| || | | Sbjct 111407 TCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGA 111348 Query 117512 ATAACTGCTTCTTTTCAGATCC--ATCCTTAATGTATTTGTCA--ATCAATTTTGAATAT 117567 | | | | ||||| || ||| |||||| || || ||| | || || || Sbjct 111347 AAAGCCGATTCTTCTC--CTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTG--TAC 111292 Query 117568 GTTTCGCCATGAACCATTTCATTATGGC-AT-TGATATGCGTAGAATGAGCGCGCTTCGC 117625 | ||| ||| | | ||| || || || || | | || || | ||||| || Sbjct 111291 ATCTCGGAATGGATATTCTCA--ATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCG 111234 Query 117626 TTATCTGCACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACC 117685 || || || || | | || | | | |||||| |||||||| || ||||| Sbjct 111233 AGATTTGAACCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGG 111174 Query 117686 CAGCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCC 117745 | ||||| || || || | | ||| ||||| | ||| |||| || ||| | | || Sbjct 111173 CGGCAAAAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCC 111114 Query 117746 AGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAA 117789 ||| | | ||| | |||||||||||| |||||||| |||||| Sbjct 111113 AGTGCTGTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAA 111070 >seq4336 Length=101003 Score = 89.7 bits (98), Expect = 6e-13 Identities = 228/343 (66%), Gaps = 18/343 (5%) Strand=Plus/Minus Query 9223 CATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTG--TTTCATTATC 9280 ||||||| | ||| ||| || || || || | || | || ||||| || | | | Sbjct 711 CATCAAGAACATCTGGGCGGTTAGTTGCTGCCAACACTATAACACCTGAATTCCCTGAG- 653 Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 || |||||||| || ||||| || || || ||||| || || | ||||||||| | Sbjct 652 -AACCCATCCATTTCAGTCAAGAGCTGATTGATAGTCTGCTCTCTTTCATCATTACCA-- 596 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | || || | | ||| | || || |||||||||||||||||||| ||||| Sbjct 595 CCTCCAAGTCCTGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAACACAATG 536 Query 9399 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 || || |||| ||| || | ||||| | ||| | || ||| || |||| Sbjct 535 CAAGGCGCTTTTGACTTT-----GCCTTCTCAAACAAATCTCTCACTCTTGAAGCTCCCA 481 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 | || ||||||| |||||||| | || ||| | ||| | ||| || || | | Sbjct 480 CGCCCACAAACAATTCCACAAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGCCT 421 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| |||| || | ||| | ||| || || || ||||| || Sbjct 420 CACCGGCAACTGCCCTGGCCAAAAGGGTTTTCCCAGTACCAGG 378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589320648358600