Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq89515 612 2e-170 seq971 196 5e-45 seq10355 120 3e-22 seq3049 118 1e-21 >seq89515 Length=155578 Score = 612 bits (678), Expect = 2e-170 Identities = 730/988 (74%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| ||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 1524 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1465 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| |||| || |||||||| || Sbjct 1464 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 1406 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | ||||||||||| Sbjct 1405 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1346 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||||||||| || |||| |||| || || ||| | ||||| |||||||| Sbjct 1345 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 1286 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||| || | | ||||| |||||||| || ||||||||||| | | | | Sbjct 1285 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 1226 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || ||||||||| | |||||||| | | | | Sbjct 1225 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1166 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| |||||||||| |||||| |||||||| || || | || || || Sbjct 1165 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 1106 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | |||||| ||||||| || ||| ||||||||||||||||||||||| Sbjct 1105 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1046 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 |||||| || |||||||||||| | |||||||| || ||||||||||| |||||||| || Sbjct 1045 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 986 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| ||| ||||| ||| | ||||| || || |||||| ||| |||||||| Sbjct 985 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGCGCTATGCATGG 926 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| || || || || | |||||| || | || Sbjct 925 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 866 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| ||||||||||| |||||||| |||||||| || || || ||||| || || || Sbjct 865 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 806 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 ||||||||||||| ||||| |||||||||||||| | | |||||||||||||| Sbjct 805 CCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGC 746 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | ||||| || || | |||||| | || ||||| ||||| Sbjct 745 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAA 686 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 | | || || || || || |||||||| || || ||| | | || | ||| ||| Sbjct 685 CCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 626 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| || Sbjct 625 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 566 Query 169450 TCACAACTTCCCACTAGACTTAGCATCT 169477 ||| |||||||| |||||| |||| ||| Sbjct 565 TCATAACTTCCCTCTAGACCTAGCTTCT 538 >seq971 Length=113153 Score = 196 bits (216), Expect = 5e-45 Identities = 250/342 (73%), Gaps = 2/342 (1%) Strand=Plus/Minus Query 168674 ATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGG 168733 ||||||||||| || |||| |||| || || ||| | ||||| |||||||| ||| Sbjct 73218 ATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGG 73159 Query 168734 GAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTC 168793 ||||| || | | ||||| |||||||| || ||||||||||| | | | | | Sbjct 73158 GAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTA 73099 Query 168794 CACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTATCATACAGACT 168852 |||||| || | || | || ||||||||| | ||||| || ||| | || || Sbjct 73098 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGAAACTTAGTTTCCAT-CT 73040 Query 168853 AGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGT 168912 |||||| |||||||||| |||||| |||||| | || || | || || | || || Sbjct 73039 GGGTATGCGACCTTGGATTACTGTTGCATATTCAACTCCTGTTGCAGCTGCTATCGCTGT 72980 Query 168913 ATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTC 168972 ||| | | |||||| ||||||| || ||| ||||||| |||||||||||||||||| Sbjct 72979 TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGATATGCCTCTAGGAATTTC 72920 Query 168973 TGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAA 169014 ||| || |||||||||||| | |||||||| || ||||| || Sbjct 72919 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAA 72878 >seq10355 Length=40529 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 168973 TGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTT 169032 ||| || |||||||||||| | |||||||| || ||||||||||| |||||||| || || Sbjct 16693 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 16752 Query 169033 CCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTC 169092 || ||| ||| ||||| ||| | ||||| || || ||||| ||| ||||||||||| Sbjct 16753 TCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGCGCTATGCATGGTTC 16812 Query 169093 ACTTGTAACATCTTCTCTAATCAGAGAGACTACTGA 169128 | ||||| ||| | | ||||| || || || || Sbjct 16813 CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 16848 >seq3049 Length=46004 Score = 118 bits (130), Expect = 1e-21 Identities = 202/298 (68%), Gaps = 24/298 (8%) Strand=Plus/Minus Query 169157 TTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTA 169216 ||||||||||| |||||||| ||||||||||| || || ||||| || || || |||| Sbjct 6005 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGGTATTTTGGCCCATTA 5946 Query 169217 ATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTA---GCAGTG 169273 |||||||| ||||| |||||||||||||| | |||||||||||| || Sbjct 5945 ATCTTCCAATATGCTAGTTTCAACAACTCTCCTTCATTACACTTCTTCCTAGATGCTAAT 5886 Query 169274 TTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTG 169333 | || || ||| || | ||||| || || | |||||| | || ||||| ||| Sbjct 5885 TGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC------ 5832 Query 169334 AACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGG 169393 |||||||| || || ||| | | || | ||| ||| ||| Sbjct 5831 ---------------AACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGG 5787 Query 169394 GGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTC 169451 | ||| | |||| | || ||||||||||||||||| || || || ||||| |||| Sbjct 5786 GCTGATATCATTAAGCGTGCCAACCTTGGTATGGAAGTTATACAGGAACGTAATGCTC 5729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563810025127200