Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq89515 520 1e-142 seq971 178 2e-39 seq10355 129 9e-25 seq3049 86.0 9e-12 >seq89515 Length=155578 Score = 520 bits (576), Expect = 1e-142 Identities = 695/966 (72%), Gaps = 0/966 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 1503 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 1444 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 1443 GCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 1384 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||||| || ||||| ||||| || | Sbjct 1383 CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCAGGTGCCATTATT 1324 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || ||||| ||||| ||||||||||| ||| | ||||| Sbjct 1323 CCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCATCCGTTGAT 1264 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| ||||| |||| |||| || | | |||||| | ||||| | Sbjct 1263 GAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1204 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | | | |||||| |||||||||| Sbjct 1203 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATT 1144 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| || || ||| | | || ||| | Sbjct 1143 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATT 1084 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||| ||||||| |||||| || ||||| ||||| || ||||||| |||| Sbjct 1083 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATG 1024 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||| Sbjct 1023 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCT 964 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| || ||||| ||||| | || || ||| | | Sbjct 963 GGTGTATTCGGCGGCTCCCTATTCAGCGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 904 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| || | ||||||| ||||| |||||||| Sbjct 903 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 844 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || |||||||| || || ||||| ||||| || | ||||||||||| || Sbjct 843 GAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 784 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 |||||||||||| | | ||||||||||| || || | ||||| | ||||| Sbjct 783 AGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 724 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| || |||||||| |||||||| || |||||||| |||||| Sbjct 723 TGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 664 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || || || || || || || ||| ||||||||| || | ||||| | Sbjct 663 CAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGT 604 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| ||||| || ||||| ||||| |||||||| ||||| | Sbjct 603 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 544 Query 216275 GCTGCT 216280 ||| || Sbjct 543 GCTTCT 538 >seq971 Length=113153 Score = 178 bits (196), Expect = 2e-39 Identities = 244/341 (72%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 215477 ATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGG 215536 ||||| ||||| || | |||| ||| || || || || ||||| ||||| |||||| Sbjct 73218 ATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGG 73159 Query 215537 GAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTC 215596 ||||| ||| | ||||| |||||| | ||||| ||||| |||| |||| || | | Sbjct 73158 GAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTA 73099 Query 215597 CACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTA 215656 |||||| | ||||| | || ||| || | ||||| ||||| || | | Sbjct 73098 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGAAACTTAGTTTCCATCTG 73039 Query 215657 GGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTA 215716 |||||| |||||||||| |||||| || || | ||||| | ||||| | || || Sbjct 73038 GGTATGCGACCTTGGATTACTGTTGCATATTCAACTCCTGTTGCAGCTGCTATCGCTGTT 72979 Query 215717 TTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCT 215776 ||| | | || ||| | ||||| || ||| ||||||| |||||| || ||||| ||| Sbjct 72978 TTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGATATGCCTCTAGGAATTTCT 72919 Query 215777 GGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAA 215817 || || ||||||| |||| |||| |||||||||||||| || Sbjct 72918 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAA 72878 >seq10355 Length=40529 Score = 129 bits (142), Expect = 9e-25 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 215776 TGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATT 215835 ||| || ||||||| |||| |||| |||||||||||||||||||| || ||||||||||| Sbjct 16693 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 16752 Query 215836 CCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTC 215895 ||||||||||| || |||||||| ||||| ||||| | || || ||||| ||||| Sbjct 16753 TCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGCGCTATGCATGGTTC 16812 Query 215896 ACTTGTTACATCTTCTCTAATCAGAGAGACAACTGA 215931 | || || ||| | | ||||| || || || || Sbjct 16813 CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 16848 >seq3049 Length=46004 Score = 86.0 bits (94), Expect = 9e-12 Identities = 127/178 (71%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 215960 TTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTC 216019 ||||| |||||||| ||||| || || || ||||| || || || || ||||| | | Sbjct 6005 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGGTATTTTGGCCCATTA 5946 Query 216020 ATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGC--AT 216077 ||||||||||| || |||||||||||| | ||||||||||| | || || Sbjct 5945 ATCTTCCAATATGCTAGTTTCAACAACTCTCCTTCATTACACTTCTTCCTAGATGCTAAT 5886 Query 216078 T-CCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACC 216134 | ||||| | |||||||| ||||| | ||| || |||||||| ||||||| Sbjct 5885 TGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACC 5828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744247900257200