Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq89515 616 2e-171 seq971 187 3e-42 seq3049 136 5e-27 seq10355 134 2e-26 seq5532 89.7 6e-13 >seq89515 Length=155578 Score = 616 bits (682), Expect = 2e-171 Identities = 722/973 (74%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 554 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATG 613 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| || Sbjct 614 ATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACGGATTGGTTGAAATTG 673 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || || Sbjct 674 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 733 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| | ||| ||||| | |||||| |||||||| |||||| ||| Sbjct 734 ACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGG 793 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || || |||||||||||||| || |||||| Sbjct 794 AAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGA 853 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | |||| Sbjct 854 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 913 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| || |||||| | || |||||||||||||| || || Sbjct 914 GTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGCCGAATACACCAGCTACGCCT 973 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| |||| |||| ||||| Sbjct 974 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 1033 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || || ||||| |||||||| ||| ||||| || | || || Sbjct 1034 AAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAG 1093 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||| | || |||||||| ||||| || || |||||| ||||| || Sbjct 1094 ATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 1153 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||||||| | | |||||| Sbjct 1154 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGT 1213 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| |||| |||||| ||||| || |||| |||||| || | | Sbjct 1214 AAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCATTCATCAACGGAT 1273 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || || || | ||| ||||| ||| | |||| | |||| Sbjct 1274 GCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCA 1333 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || || || || |||||||| || | ||||| |||| || || ||||| ||||| ||| Sbjct 1334 CCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 1393 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| ||| ||||| || || ||||| ||| || | | || Sbjct 1394 ATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA-AGTTGCGGTCAATAA 1452 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | |||||||| |||| || | |||||| | ||| ||| | Sbjct 1453 GGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTAT 1512 Query 84944 CCAATCACAGAAG 84956 ||| | ||||||| Sbjct 1513 CCAGTTACAGAAG 1525 >seq971 Length=113153 Score = 187 bits (206), Expect = 3e-42 Identities = 248/342 (73%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 84432 TTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATG 84491 ||||| || |||||||| |||| |||| ||||||| || || || || || || ||||| Sbjct 72878 TTATGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATA 72937 Query 84492 CCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGAT-GCCGCTGC 84550 ||||||| ||| ||||| || | || || | | ||| ||||| ||| || ||||| Sbjct 72938 TCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGC-GATAGCAGCTGC 72996 Query 84551 AACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTC 84610 ||| |||| || || |||||| ||||| || |||||||| ||| | | ||||| Sbjct 72997 AACAGGAGTTGAATATGCAACAGTAATCCAAGGTCGCATACCCAGATGGAAACTAAGTTT 73056 Query 84611 CCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATA 84670 ||| ||||||||||||||| | | |||||| | |||||| | |||| |||| ||| Sbjct 73057 CCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATA 73116 Query 84671 AGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATG 84730 ||| ||||| || |||| |||||| || | ||| |||||||| || || || || || Sbjct 73117 AGGACCACCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTG 73176 Query 84731 TAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAAT 84772 | ||| ||||| ||| | |||| | |||||| || || Sbjct 73177 CAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGAT 73218 >seq3049 Length=46004 Score = 136 bits (150), Expect = 5e-27 Identities = 206/296 (70%), Gaps = 24/296 (8%) Strand=Plus/Plus Query 83997 GCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCCCAG 84056 || |||||||| || || |||||||||||||| |||||| |||| | ||| ||||| Sbjct 5731 GCATTACGTTCCTGTATAACTTCCATACCAAGGTTGGCACGCTTAATGATATCAGCCCAA 5790 Query 84057 GTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGA 84116 ||||| | |||||| ||| ||||| || | | ||||| Sbjct 5791 GTATTAATTACACGGCCTTGACTATCAACTA----CGGATTGG----------------- 5829 Query 84117 TTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAA--- 84173 || || ||||| ||||| | ||| | ||||| ||||| || | || || |||||| Sbjct 5830 TTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACTTACTACAGGCCAATTA 5889 Query 84174 GCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGA 84233 ||| | | ||| ||||| | ||| || |||||||| |||||| |||||||| | Sbjct 5890 GCATCTAGGAAGAAGTGTAATGAAGGAGAGTTGTTGAAACTAGCATATTGGAAGATTAAT 5949 Query 84234 CGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAA 84289 | || || || || ||||| || ||||||||||||||||| || ||||||||||| Sbjct 5950 GGGCCAAAATACCCATGAGCGGCTACAATATTATAAGTTTCTTCCTCTTGACCGAA 6005 >seq10355 Length=40529 Score = 134 bits (148), Expect = 2e-26 Identities = 124/157 (79%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 84316 TTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATA 84375 ||||||| ||||| | ||| | | |||||| || | ||||||||||| || |||| Sbjct 16850 TTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTAAATA 16791 Query 84376 GAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTAT 84435 | | || |||||||||||||| || || ||||||||||| || |||||||||||||| | Sbjct 16790 GGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGT 16731 Query 84436 GTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCC 84472 | || |||||||| |||| |||| ||||||| || || Sbjct 16730 GCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 16694 >seq5532 Length=39607 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/164 (72%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 83970 GACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGC 84029 || || || || || ||||||||||| || ||||||| ||||| ||||| | |||||| Sbjct 3121 GAGGCTAGGTCTAAAGGGAAGTTATGAGCATTACGTTTATGCATAACTTCTAAACCAAGG 3180 Query 84030 CCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGA 84089 | ||||| ||||| | ||| ||||| |||| | |||| | ||| ||||| | Sbjct 3181 CTGGCACAATTAATGATATCAGCCCAAATATTAATTACACCGCCTTGACTATC------A 3234 Query 84090 CTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCT 84133 || ||||| || || ||||| || || || ||||| ||||| Sbjct 3235 TCTTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCT 3278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570634380546200