Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3095 192 7e-44 seq341 149 7e-31 seq1602 109 6e-19 seq6003 105 8e-18 seq1847 98.7 1e-15 >seq3095 Length=123113 Score = 192 bits (212), Expect = 7e-44 Identities = 577/883 (65%), Gaps = 31/883 (4%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || || ||||| |||| || || ||||||||||| ||||| |||| ||| || || Sbjct 111876 TTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCCCCTGTAAACTGATCAAT 111817 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| |||||||||| |||| ||||| |||| ||| || |||| | | | || Sbjct 111816 TCCATCCAATCAAATGGGTTTTGAACATTGTATAATTTGCTGTATCCAAGTGCATTCAGC 111757 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 |||||||| |||||||||| ||| ||| |||||| ||||| ||||||||| | | Sbjct 111756 AGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATCACCATTCATTCCGACCAGG 111697 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | ||| || ||||| | |||||| || |||| || || || | | || Sbjct 111696 GCACAAGGAAGAGCATCGCAGACAAATTCCCTCTCGATATCCACCGCGTCAGCAACAAGT 111637 Query 18910 GATACAACTCTATCTTCATTAGGAGGGT-AT----AGAA-GATGTTTAAACATCAAACAT 18963 |||| ||| || | ||| | || |||| | ||| | | || || Sbjct 111636 CCCTTGACTCGATCCTCGCT--GAGTTTCATCCTCAGAAGGCTGT----AGAGCAGGCAA 111583 Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 ||||||||||| |||| ||||| |||| || || || || ||||| ||||| ||| Sbjct 111582 GCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAATCCA 111523 Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATAT 19082 ||||| | ||| | ||||||| ||| ||||| | ||| || ||| || ||||| || Sbjct 111522 GGCATTAATCCACGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAAAAT 111464 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA----T 19138 ||||| || ||||| || | || | || | | | ||| | | | Sbjct 111463 CCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGC-------GAAGGATTCTGAGCCGT 111411 Query 19139 GAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 |||||| || ||||| | |||||||| ||||| || | ||||| || | | Sbjct 111410 CAATCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGT 111351 Query 19199 TAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGT 19255 || | ||| | | ||| || | ||| || | ||| | || | | | ||||| Sbjct 111350 GGAAAAGCCGATTCTT---CTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGT 111294 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 |||| || ||||| ||||| || || || ||||| || || |||||| | || || | Sbjct 111293 ACATCTCGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCG 111234 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 || || || || | || || | | | ||| || ||| || || || | Sbjct 111233 AGATTTGAACCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGG 111174 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435 | |||||||| || | ||||| ||||| ||||| || ||||| ||| ||| ||| || Sbjct 111173 CGGCAAAAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCC 111114 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | | | | ||| | || ||||| || ||||| | |||||||| || |||||||| | Sbjct 111113 AGTGCTGTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCT 111054 Query 19496 TTTTATACATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 | || ||||| | ||| || | ||||||| || || || || Sbjct 111053 TCTTGTACATTTCCCAAATTTGGGGATATTGAATTGGGAACAT 111011 >seq341 Length=228855 Score = 149 bits (164), Expect = 7e-31 Identities = 570/883 (65%), Gaps = 29/883 (3%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| || ||||| |||| || || ||||||||||| ||||| |||| || || | Sbjct 2480 TTTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTCGTTTTCCCCTGCAAACTGATCAA 2539 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| |||||||||| |||| ||||| |||| ||| || | || | ||| | Sbjct 2540 TTCCATCCAATCAAATGGGTTTTGCACATTGTATAATTTGCTGTACCCAAGTTCATTCAA 2599 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 |||| ||| ||||| |||| ||| || |||||| ||||| ||||| || | | Sbjct 2600 CAGTCGATCAGCTACGAATTCAATGTACTGACTCATCAGATCACCGTTCATCCCAACCAG 2659 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || || || || |||||| || || | ||| || || | ||||| Sbjct 2660 GGCACAAGGAAGGGCTTCGCAAACAAATTCCCTCTCAATTTCTACGGCATCAGCAATAAT 2719 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGT-AT----AG-AAGATGTTTAAACATCAAACA 18962 |||| ||| ||| | || | || || | | ||| | | ||| || Sbjct 2720 CCCCTTGACTCGATCCTCACT--CAGTTTCATCCTCAGCAGGCTGT----AGAGCAAGCA 2773 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 ||||||||||| |||| ||||| |||| | ||||| || || || || ||||| || Sbjct 2774 CGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTTAATCC 2833 Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATA 19081 |||||| | ||||| || |||| ||| ||||| | ||| || ||| || ||||| | Sbjct 2834 AGGCATTAATCCTCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCCCGAGAAGAAAA 2892 Query 19082 TACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA--ACTAGCATCATTATTATG 19139 | ||||| || || || || | || | || || | ||| | | || Sbjct 2893 TCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGGACTCTGAGC-----CATC 2947 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 ||||| || ||||| | |||||||| | ||||| || | ||||| || | | Sbjct 2948 GATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGCGTG 3007 Query 19200 AAATAG---ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 || || || | | ||| || | ||| || | ||| | || | | | |||||| Sbjct 3008 GAAAAGCCTATTCTT---CTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGTA 3064 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 ||| || ||||| ||||| || || || || || || || ||||| | || || | Sbjct 3065 CATCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCGA 3124 Query 19317 TATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 || || || || || || || ||| | | | || || ||| || || || | Sbjct 3125 GATTTGAACCTC-CTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGG 3183 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435 | || ||||| || | | || ||||| ||||| || || || || | | | | || Sbjct 3184 CGGCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCC 3243 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | | | ||||| | || ||||| || ||||| | |||||||| || |||||||||| Sbjct 3244 AGTGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTT 3303 Query 19496 TTTTATACATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 | || ||||| | ||| || | |||| || || ||||| || Sbjct 3304 TCTTGTACATTTCCCAAATTTTGGGATACTGAATTGGAAACAT 3346 >seq1602 Length=196056 Score = 109 bits (120), Expect = 6e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | |||||| | ||| |||||||||||| |||||||| || ||||| | | Sbjct 116011 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGAGTAAACCATCGCTGAGATAAGAGATGG 116070 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||| |||||||||||| ||||| | ||| || || | ||| || | ||| ||| Sbjct 116071 TATGTTTTAATAACAGAATCGATATCATCCTTATGGATCCCAACAGAAACCCTCATCAAC 116130 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 || | |||||| || || |||| || | || || || | ||| || | || | Sbjct 116131 ATGTGTTGAGGCCTCTCCACAACCTTCCCTTGGATCTTTAAGAAATAAGACCTCTCAAGG 116190 Query 48780 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 |||||||||||||| || | || |||||| | |||| Sbjct 116191 GTTTTAAAACCAAAGTAATCATACTCAAAGTCTCTGTCAT 116230 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| || ||||| | ||||| || |||| || | ||||| | |||||| |||||||| Sbjct 115644 ACCCCCCTGATCCACATATCGAGCTGTATCATTGAACACTCTCAGCATTGGAACAATACC 115703 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| || | ||||| ||||| ||||||||||||| | || | || ||| | || Sbjct 115704 ATTGGAGGTCCCATTTGTTCCACGAATATAACTTCCAGTTGCACGGATGTTATGCACAGA 115763 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || ||| || | ||||||| || || |||||||| || Sbjct 115764 GACACCAATTCCTCCGGCTGATTTGCTGATGACAGCACACTCCTTCAGTGTATCATATAT 115823 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || || ||||| ||| |||| Sbjct 115824 GCCCTCAATGCTATCCTCTTTCAT 115847 >seq6003 Length=93342 Score = 105 bits (116), Expect = 8e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | |||||| | ||| ||||||||||| |||||||| || || || | | | Sbjct 81095 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGTGTAAACCATCGCTGAGACAATAGATGA 81154 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 ||||||| ||| | | ||||||||| | ||| || || || | ||| || | ||| || Sbjct 81155 TATGTTTTGATAGCTGCATCTATATCATCCTTG-TGGATCCCAACAGAAACCCTCATCAA 81213 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||||| || | || || || ||||| ||| | || | Sbjct 81214 CATGTGTTGAGGCCTTTCAACAACCTTCCCTCTGATCTTTAAGAGATACGATCTCTCAAG 81273 Query 48779 TGTTTTAAAACCAAA 48793 |||||||||||||| Sbjct 81274 AGTTTTAAAACCAAA 81288 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||| ||||| | ||||| || || | || | |||| | |||||| ||||| || Sbjct 80734 ACCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCC 80793 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| ||||| ||||| ||| ||||||||| |||| | || ||| || || Sbjct 80794 ATTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGA 80853 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || ||| || | ||||||| ||| || ||||||||||| Sbjct 80854 GACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAAT 80913 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || || ||||| ||| |||| Sbjct 80914 GCCCTCAATGCTATCTTCTTTCAT 80937 >seq1847 Length=115635 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||| ||||| | ||||| || || | || | |||| | |||||| ||||| || Sbjct 24546 ACCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCC 24605 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| ||||| ||||| ||| ||||||||| |||| | || ||| || || Sbjct 24606 ATTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGA 24665 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || ||| || | ||||||| ||| || ||||||||||| Sbjct 24666 GACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAAT 24725 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || || ||||| ||| |||| Sbjct 24726 GCCCTCGATGCTATCTTCTTTCAT 24749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561479835384600