Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq89515 491 1e-134 seq971 150 5e-32 seq3049 104 7e-18 seq10355 84.2 6e-12 >seq89515 Length=155578 Score = 491 bits (544), Expect = 1e-134 Identities = 705/988 (71%), Gaps = 4/988 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || || || |||||||| || | |||||||| || || | Sbjct 1524 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1465 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| |||||||||| || || || Sbjct 1464 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 1406 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || ||||| || ||||| || || || | || |||||||| Sbjct 1405 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1346 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || ||||| || | | || | ||| || || || | || |||||||| || Sbjct 1345 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 1286 Query 26041 CTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 ||||||||| |||| | | || || ||| ||||||| || || || ||| |||| ||| Sbjct 1285 CTGGGAAGC-GGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 1227 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACA 26159 | | ||||||||| | || ||||| || || | |||||||||| || | Sbjct 1226 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1167 Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCG 26219 | || || ||| |||| ||||| |||||||||| |||| || | | || ||| || Sbjct 1166 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 1107 Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279 | || ||||| | || || | || ||||| |||||| |||||| |||||||| || | Sbjct 1106 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1047 Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339 | ||||||||||| ||||| ||| | |||||||| || || || || || || ||||||| Sbjct 1046 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 987 Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACG 26399 |||| || ||| || || ||||| || ||||| || | || ||| |||||||| | Sbjct 986 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGCGCTATGCATG 927 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATG 26459 | ||||| ||||| | || ||||| ||||| | | || ||| | | Sbjct 926 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 867 Query 26460 GCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 26519 | || | || || ||||| ||||| || |||||||| || || || || || || |||| Sbjct 866 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 807 Query 26520 GGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTG 26579 | ||||||| || || ||||| ||||| || ||| ||||| | || ||||| || | Sbjct 806 GCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 747 Query 26580 CTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTA 26639 || ||||||| || || || || ||| | || || | |||||| |||| ||||| || | Sbjct 746 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCA 687 Query 26640 ACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTA 26699 ||||||||||||| || || ||||| || ||||| ||| | | || |||| || Sbjct 686 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATA 627 Query 26700 CATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATG 26759 | ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||||| Sbjct 626 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 567 Query 26760 CTCATAACTTTCCACTTGACTTAGCATC 26787 |||||||||| || || ||| |||| || Sbjct 566 CTCATAACTTCCCTCTAGACCTAGCTTC 539 >seq971 Length=113153 Score = 150 bits (166), Expect = 5e-32 Identities = 215/300 (72%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 26027 CATTTTTACCCGATCTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACC 26085 || |||||||| ||||||||||| |||| | | || || ||| ||||||| || || || Sbjct 73176 CACTTTTACCCAATCTGGGAAGC-GGCATCCGTTGATGAATGGTTATACAACGGTGGTCC 73118 Query 26086 ATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTG 26145 ||| |||| ||| | | ||||||||| | || ||||| || || | |||| Sbjct 73117 TTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTG 73058 Query 26146 GGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACT 26205 | |||| || | || || ||| |||| ||||| |||||||||| || | || | Sbjct 73057 GAAACTTAGTTTCCATCTGGGTATGCGACCTTGGATTACTGTTGCATATTCAACTCCTGT 72998 Query 26206 ATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGG 26265 | || ||| |||| || ||||| | || || | || ||||| |||||| ||||| Sbjct 72997 TGCAGCTGCTATCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGA 72938 Query 26266 AATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAA 26325 |||||||| || || ||||||||||| ||||| ||| | |||||||| || || ||||| Sbjct 72937 TATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAA 72878 >seq3049 Length=46004 Score = 104 bits (114), Expect = 7e-18 Identities = 199/298 (67%), Gaps = 24/298 (8%) Strand=Plus/Minus Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527 || || ||||| ||||| || ||||||||||| || || || ||||| ||||| |||| Sbjct 6005 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGGTATTTTGGCCCATTA 5946 Query 26528 ATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCT---TGCTACT 26584 || || || ||||| ||||| || ||| | ||| | || ||||| || ||||| | Sbjct 5945 ATCTTCCAATATGCTAGTTTCAACAACTCTCCTTCATTACACTTCTTCCTAGATGCTAAT 5886 Query 26585 TGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTA 26644 ||||| || || | || ||| | || || | |||||| |||| ||||| Sbjct 5885 TGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGC---------- 5836 Query 26645 AATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGG 26704 || ||||| || ||||| ||| | | || |||| ||| ||| Sbjct 5835 -----------TTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGG 5787 Query 26705 GCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTC 26762 |||||| | | || || || ||||| || | |||||||| || || |||||||||| Sbjct 5786 GCTGATATCATTAAGCGTGCCAACCTTGGTATGGAAGTTATACAGGAACGTAATGCTC 5729 >seq10355 Length=40529 Score = 84.2 bits (92), Expect = 6e-12 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 26284 TGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATT 26343 ||||||||| ||||| ||| | |||||||| || || || || || || ||||||||||| Sbjct 16693 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 16752 Query 26344 CCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCT-TTTCGCTGCTATGCACGGAA 26402 || ||| || || ||||| || ||||| || | || ||| || |||||||| || Sbjct 16753 TCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGC-GCTATGCATGGTT 16811 Query 26403 GTTTGGTTACTTC 26415 ||||| ||||| Sbjct 16812 CCTTGGTAACTTC 16824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146570431212360